Igkv15-101 Pseudogene Detail

Summary

• Symbol
  Igkv15-101
• Name
  immunoglobulin kappa chain variable 15-101

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009873
  NCBI Gene: 692168
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:68458405-68458702 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 31.19 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  182 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009873	pseudogenic gene segment	Chr6:68458405-68458703 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0000258	pseudogenic gene segment	Chr6:68688620-68688918 (-)
A/J	MGP_AJ_G0000232	pseudogenic gene segment	Chr6:65779635-65779933 (-)
AKR/J	MGP_AKRJ_G0000235	pseudogenic gene segment	Chr6:67729110-67729407 (-)
BALB/cJ	MGP_BALBcJ_G0000229	pseudogenic gene segment	Chr6:66063834-66064132 (-)
C3H/HeJ	MGP_C3HHeJ_G0000237	pseudogenic gene segment	Chr6:116438799-116439097 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0000335	pseudogenic gene segment	Chr6:70364438-70364736 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0000226	pseudogenic gene segment	Chr6:68084942-68085239 (-)
CBA/J	MGP_CBAJ_G0000221	pseudogenic gene segment	Chr6:73132108-73132406 (-)
DBA/2J	MGP_DBA2J_G0000218	pseudogenic gene segment	Chr6:65376157-65376455 (-)
FVB/NJ	MGP_FVBNJ_G0000221	pseudogenic gene segment	Chr6:64827421-64827719 (-)
LP/J	MGP_LPJ_G0000270	pseudogenic gene segment	Chr6:68509352-68509650 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000235	pseudogenic gene segment	Chr6:76875127-76875424 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000318	pseudogenic gene segment	Chr6:67798734-67799031 (-)
PWK/PhJ	MGP_PWKPhJ_G0000192	pseudogenic gene segment	Chr6:64329417-64329715 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0000172	pseudogenic gene segment	Chr6:67188994-67189292 (-)
WSB/EiJ	MGP_WSBEiJ_G0000230	pseudogenic gene segment	Chr6:68119845-68120143 (-)

Homology

• Gene Tree
  Igkv15-101
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000105319 (Evidence)
• NCBI Gene
  692168

Representative Sequences			Length	Strain/Species
genomic	692168	NCBI Gene Model | MGI Sequence Detail	298	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;