Ighv5-1 Pseudogene Detail

Summary

• Symbol
  Ighv5-1
• Name
  immunoglobulin heavy variable V5-1

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009886
  NCBI Gene: 777683
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:113536549-113536842 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 62.13 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  30 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009886	pseudogenic gene segment	Chr12:113536547-113537022 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0000197	pseudogenic gene segment	Chr12:116135947-116136415 (-)
A/J	MGP_AJ_G0000176	pseudogenic gene segment	Chr12:111625451-111625919 (-)
AKR/J	MGP_AKRJ_G0000172	pseudogenic gene segment	Chr12:114947398-114947866 (-)
BALB/cJ	MGP_BALBcJ_G0000175	pseudogenic gene segment	Chr12:112105666-112106134 (-)
C3H/HeJ	MGP_C3HHeJ_G0000168	pseudogenic gene segment	Chr12:115404990-115405458 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0000245	pseudogenic gene segment	Chr12:119678886-119679361 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0000163	pseudogenic gene segment	Chr12:110290785-110291259 (-)
CBA/J	MGP_CBAJ_G0000164	pseudogenic gene segment	Chr12:124258799-124259267 (-)
DBA/2J	MGP_DBA2J_G0000166	pseudogenic gene segment	Chr12:111140188-111140656 (-)
FVB/NJ	MGP_FVBNJ_G0000163	pseudogenic gene segment	Chr12:109960881-109961349 (-)
LP/J	MGP_LPJ_G0000195	pseudogenic gene segment	Chr12:115999516-115999991 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000171	pseudogenic gene segment	Chr12:127370945-127371420 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000238	pseudogenic gene segment	Chr12:114369248-114369716 (-)
PWK/PhJ	MGP_PWKPhJ_G0000139	pseudogenic gene segment	Chr12:105839704-105840172 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0000117	pseudogenic gene segment	Chr12:108552815-108553286 (-)
WSB/EiJ	MGP_WSBEiJ_G0000171	pseudogenic gene segment	Chr12:115309540-115310008 (-)

Homology

• Gene Tree
  Ighv5-1
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000102901 (Evidence)
• NCBI Gene
  777683

Representative Sequences			Length	Strain/Species
genomic	777683	NCBI Gene Model | MGI Sequence Detail	294	C57BL/6J
transcript	JF690406	GenBank | ENA | DDBJ | MGI Sequence Detail	303	C57BL/6. kappa(-)*

References

• Summaries
  All 5
• Earliest
  J:70059 Williams GS, et al., Unequal v(h) gene rearrangement frequency within the large v(h)7183 gene family is not due to recombination signal sequence variation, and mapping of the genes shows a bias of rearrangement based on chromosomal location. J Immunol. 2001 Jul 1;167(1):257-63
• Latest
  J:171360 Kalinina O, et al., Alternative mechanisms of receptor editing in autoreactive B cells. Proc Natl Acad Sci U S A. 2011 Apr 26;108(17):7125-30