Ighv5-19 Pseudogene Detail

Summary

• Symbol
  Ighv5-19
• Name
  immunoglobulin heavy variable V5-19

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009894
  NCBI Gene: 780798
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:113848381-113848677 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 62.22 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  101 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009894	pseudogenic gene segment	Chr12:113848381-113848962 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0000204	pseudogenic gene segment	Chr12:116468673-116468969 (-)
A/J	MGP_AJ_G0000182	pseudogenic gene segment	Chr12:111980429-111980725 (-)
AKR/J	MGP_AKRJ_G0000179	pseudogenic gene segment	Chr12:115367144-115367440 (-)
BALB/cJ	MGP_BALBcJ_G0000181	pseudogenic gene segment	Chr12:112424030-112424326 (-)
C3H/HeJ	MGP_C3HHeJ_G0000175	pseudogenic gene segment	Chr12:115787294-115787590 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0000261	pseudogenic gene segment	Chr12:120075796-120076092 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0000170	pseudogenic gene segment	Chr12:124712451-124712747 (-)
DBA/2J	MGP_DBA2J_G0000172	pseudogenic gene segment	Chr12:111564467-111564763 (-)
FVB/NJ	MGP_FVBNJ_G0000174	pseudogenic gene segment	Chr12:110285485-110285781 (-)
LP/J	MGP_LPJ_G0000213	pseudogenic gene segment	Chr12:116419161-116419457 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000179	pseudogenic gene segment	Chr12:127818004-127818300 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000253	pseudogenic gene segment	Chr12:114772541-114772837 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0000185	pseudogenic gene segment	Chr12:115715354-115715650 (-)

Homology

• Gene Tree
  Ighv5-19
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000104319 (Evidence)
• NCBI Gene
  780798

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104319	Ensembl Gene Model | MGI Sequence Detail	297	C57BL/6J
transcript	ENSMUST00000193466	Ensembl | MGI Sequence Detail	297	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;