Ighv6-2 Pseudogene Detail

Summary

• Symbol
  Ighv6-2
• Name
  immunoglobulin heavy variable V6-2

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009895
  NCBI Gene: 780822
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:114053007-114053301 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 62.28 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  158 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009895	pseudogenic gene segment	Chr12:114053007-114053301 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0000208	pseudogenic gene segment	Chr12:116675497-116675792 (-)
A/J	MGP_AJ_G0000186	pseudogenic gene segment	Chr12:112216809-112217104 (-)
AKR/J	MGP_AKRJ_G0000183	pseudogenic gene segment	Chr12:115580804-115581101 (-)
BALB/cJ	MGP_BALBcJ_G0000185	pseudogenic gene segment	Chr12:112665120-112665415 (-)
C3H/HeJ	MGP_C3HHeJ_G0000179	pseudogenic gene segment	Chr12:115942913-115943210 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0000265	pseudogenic gene segment	Chr12:120321286-120321580 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000101	pseudogenic gene segment	Chr12:108678532-108678823 (-)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0000174	pseudogenic gene segment	Chr12:124928534-124928831 (-)
DBA/2J	MGP_DBA2J_G0000175	pseudogenic gene segment	Chr12:111802472-111802767 (-)
FVB/NJ	MGP_FVBNJ_G0000177	pseudogenic gene segment	Chr12:110519609-110519900 (-)
LP/J	MGP_LPJ_G0000216	pseudogenic gene segment	Chr12:116639783-116640077 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000183	pseudogenic gene segment	Chr12:128119689-128119983 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000257	pseudogenic gene segment	Chr12:114987772-114988069 (-)
PWK/PhJ	MGP_PWKPhJ_G0000150	pseudogenic gene segment	Chr12:106448644-106448939 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0000135	pseudogenic gene segment	Chr12:109188612-109188907 (-)
WSB/EiJ	MGP_WSBEiJ_G0000188	pseudogenic gene segment	Chr12:115956609-115956904 (-)

Homology

• Gene Tree
  Ighv6-2
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000104129 (Evidence)
• NCBI Gene
  780822

Representative Sequences			Length	Strain/Species
genomic	780822	NCBI Gene Model | MGI Sequence Detail	295	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;