Ighv8-1 Pseudogene Detail

Summary

• Symbol
  Ighv8-1
• Name
  immunoglobulin heavy variable V8-1

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009900
  NCBI Gene: 780833
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:114296416-114296706 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 62.35 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  90 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009900	pseudogenic gene segment	Chr12:114296416-114296706 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0000212	pseudogenic gene segment	Chr12:116952593-116952883 (-)
A/J	MGP_AJ_G0000190	pseudogenic gene segment	Chr12:112511136-112511426 (-)
AKR/J	MGP_AKRJ_G0000188	pseudogenic gene segment	Chr12:115787575-115787864 (-)
BALB/cJ	MGP_BALBcJ_G0000189	pseudogenic gene segment	Chr12:113019973-113020263 (-)
C3H/HeJ	MGP_C3HHeJ_G0000184	pseudogenic gene segment	Chr12:116155379-116155668 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0000272	pseudogenic gene segment	Chr12:120602053-120602343 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000103	pseudogenic gene segment	Chr12:108878894-108879183 (-)
CAST/EiJ	MGP_CASTEiJ_G0000183	pseudogenic gene segment	Chr12:110934860-110935150 (-)
CBA/J	MGP_CBAJ_G0000179	pseudogenic gene segment	Chr12:125156082-125156371 (-)
DBA/2J	MGP_DBA2J_G0000178	pseudogenic gene segment	Chr12:112070188-112070478 (-)
FVB/NJ	MGP_FVBNJ_G0000181	pseudogenic gene segment	Chr12:110765043-110765333 (-)
LP/J	MGP_LPJ_G0000221	pseudogenic gene segment	Chr12:116938320-116938610 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000188	pseudogenic gene segment	Chr12:128423704-128423994 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000262	pseudogenic gene segment	Chr12:115198005-115198294 (-)
PWK/PhJ	MGP_PWKPhJ_G0000153	pseudogenic gene segment	Chr12:106692374-106692664 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0000138	pseudogenic gene segment	Chr12:109484127-109484417 (-)
WSB/EiJ	MGP_WSBEiJ_G0000192	pseudogenic gene segment	Chr12:116231978-116232268 (-)

Homology

• Gene Tree
  Ighv8-1
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000104115 (Evidence)
• NCBI Gene
  780833

Representative Sequences			Length	Strain/Species
genomic	780833	NCBI Gene Model | MGI Sequence Detail	291	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;