Ighv1-1 Pseudogene Detail

Summary

• Symbol
  Ighv1-1
• Name
  immunoglobulin heavy variable V1-1

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009901
  NCBI Gene: 780834
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:114315325-114315615 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 62.36 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  218 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009901	pseudogenic gene segment	Chr12:114315325-114315615 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0000213	pseudogenic gene segment	Chr12:116967826-116968116 (-)
A/J	MGP_AJ_G0000191	pseudogenic gene segment	Chr12:112534848-112535138 (-)
AKR/J	MGP_AKRJ_G0000189	pseudogenic gene segment	Chr12:115803850-115804140 (-)
BALB/cJ	MGP_BALBcJ_G0000190	pseudogenic gene segment	Chr12:113035632-113035922 (-)
C3H/HeJ	MGP_C3HHeJ_G0000185	pseudogenic gene segment	Chr12:116171279-116171569 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0000273	pseudogenic gene segment	Chr12:120620732-120621022 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000104	pseudogenic gene segment	Chr12:108893484-108893746 (-)
CAST/EiJ	MGP_CASTEiJ_G0000184	pseudogenic gene segment	Chr12:110951297-110951606 (-)
CBA/J	MGP_CBAJ_G0000180	pseudogenic gene segment	Chr12:125173249-125173539 (-)
DBA/2J	MGP_DBA2J_G0000179	pseudogenic gene segment	Chr12:112085631-112085921 (-)
FVB/NJ	MGP_FVBNJ_G0000182	pseudogenic gene segment	Chr12:110780940-110781230 (-)
LP/J	MGP_LPJ_G0000222	pseudogenic gene segment	Chr12:116957029-116957319 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000189	pseudogenic gene segment	Chr12:128451827-128452117 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000263	pseudogenic gene segment	Chr12:115213418-115213708 (-)
PWK/PhJ	MGP_PWKPhJ_G0000154	pseudogenic gene segment	Chr12:106719050-106719340 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0000139	pseudogenic gene segment	Chr12:109505860-109506156 (-)
WSB/EiJ	MGP_WSBEiJ_G0000193	pseudogenic gene segment	Chr12:116250555-116250845 (-)

Homology

• Gene Tree
  Ighv1-1
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000103340 (Evidence)
• NCBI Gene
  780834

Representative Sequences			Length	Strain/Species
genomic	780834	NCBI Gene Model | MGI Sequence Detail	291	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;