Ighv1-3 Pseudogene Detail

Summary

• Symbol
  Ighv1-3
• Name
  immunoglobulin heavy variable V1-3

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009902
  NCBI Gene: 780859
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:114445235-114445536 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 62.38 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  221 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009902	pseudogenic gene segment	Chr12:114445235-114445536 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0000193	pseudogenic gene segment	Chr12:112673867-112674168 (-)
AKR/J	MGP_AKRJ_G0000192	pseudogenic gene segment	Chr12:116015492-116015900 (-)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0000188	pseudogenic gene segment	Chr12:116393448-116395414 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0000275	pseudogenic gene segment	Chr12:120762013-120762314 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0000186	pseudogenic gene segment	Chr12:111150721-111151022 (-)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0000180	pseudogenic gene segment	Chr12:112237725-112238026 (-)
FVB/NJ	MGP_FVBNJ_G0000184	pseudogenic gene segment	Chr12:110961691-110961992 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0000191	pseudogenic gene segment	Chr12:128641255-128641556 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000267	pseudogenic gene segment	Chr12:115417382-115417683 (-)
PWK/PhJ	MGP_PWKPhJ_G0000160	pseudogenic gene segment	Chr12:107013187-107013488 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0000141	pseudogenic gene segment	Chr12:109646246-109646547 (-)
WSB/EiJ	MGP_WSBEiJ_G0000194	pseudogenic gene segment	Chr12:116435331-116435632 (-)

Homology

• Gene Tree
  Ighv1-3
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000102641 (Evidence)
• NCBI Gene
  780859

Representative Sequences			Length	Strain/Species
genomic	780859	NCBI Gene Model | MGI Sequence Detail	302	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;