Ighv1-29 Pseudogene Detail

Summary

• Symbol
  Ighv1-29
• Name
  immunoglobulin heavy variable V1-29

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009909
  NCBI Gene: 780887
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:114775941-114776225 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 62.44 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  269 from dbSNP Build 142
• Strain Annotations
  6

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009909	pseudogenic gene segment	Chr12:114775941-114776365 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0000283	pseudogenic gene segment	Chr12:121110606-121111030 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0000193	pseudogenic gene segment	Chr12:111459986-111460410 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0000175	pseudogenic gene segment	Chr4:24671140-24671560 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0000157	pseudogenic gene segment	Chr12:109946161-109946569 (+)
WSB/EiJ	MGP_WSBEiJ_G0000205	pseudogenic gene segment	Chr12:116841228-116841650 (-)

Homology

• Gene Tree
  Ighv1-29
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  10
• RefSeq
  1

• Ensembl
  ENSMUSG00000102512 (Evidence)
• NCBI Gene
  780887

Representative Sequences			Length	Strain/Species
genomic	780887	NCBI Gene Model | MGI Sequence Detail	285	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Ighv1-29:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr118101	Chr12:114776418-114776425 (-)	-197 bp