Ighv1-40 Pseudogene Detail

Summary

• Symbol
  Ighv1-40
• Name
  immunoglobulin heavy variable V1-40

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009912
  NCBI Gene: 780892
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:114888561-114888853 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 62.47 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  162 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009912	pseudogenic gene segment	Chr12:114888561-114888988 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0000222	pseudogenic gene segment	Chr12:117658876-117659303 (-)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0000289	pseudogenic gene segment	Chr12:121270491-121270918 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0000251	pseudogenic gene segment	ChrX:117183005-117183433 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0000193	pseudogenic gene segment	Chr12:111420208-111420635 (-)
LP/J	MGP_LPJ_G0000233	pseudogenic gene segment	Chr12:117615271-117615698 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000203	pseudogenic gene segment	Chr12:129422080-129422507 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000279	pseudogenic gene segment	Chr12:115821020-115821447 (-)
PWK/PhJ	MGP_PWKPhJ_G0000180	pseudogenic gene segment	Chr4:24795770-24796181 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0000148	pseudogenic gene segment	Chr12:109854234-109861036 (-)
WSB/EiJ	MGP_WSBEiJ_G0000202	pseudogenic gene segment	Chr12:116841228-116841649 (-)

Homology

• Gene Tree
  Ighv1-40
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  1

• Ensembl
  ENSMUSG00000102991 (Evidence)
• NCBI Gene
  780892

Representative Sequences			Length	Strain/Species
genomic	780892	NCBI Gene Model | MGI Sequence Detail	293	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;