Ighv1-45 Pseudogene Detail

Summary

• Symbol
  Ighv1-45
• Name
  immunoglobulin heavy variable V1-45

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009913
  NCBI Gene: 780894
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:114933675-114933968 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 62.47 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  217 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009913	pseudogenic gene segment	Chr12:114933675-114934108 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0000225	pseudogenic gene segment	Chr12:117710884-117711317 (-)
A/J	no annotation
AKR/J	MGP_AKRJ_G0000200	pseudogenic gene segment	Chr12:116634085-116634517 (-)
BALB/cJ	MGP_BALBcJ_G0000199	pseudogenic gene segment	Chr12:113853102-113853535 (-)
C3H/HeJ	MGP_C3HHeJ_G0000196	pseudogenic gene segment	Chr12:116917194-116917626 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0000292	pseudogenic gene segment	Chr12:121319175-121319608 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000109	pseudogenic gene segment	Chr12:109112870-109113302 (-)
CAST/EiJ	MGP_CASTEiJ_G0000199	pseudogenic gene segment	Chr12:111562277-111562710 (-)
CBA/J	MGP_CBAJ_G0000189	pseudogenic gene segment	Chr12:125988522-125988954 (-)
DBA/2J	MGP_DBA2J_G0000189	pseudogenic gene segment	Chr12:112716933-112717366 (-)
FVB/NJ	MGP_FVBNJ_G0000196	pseudogenic gene segment	Chr12:111461067-111461500 (-)
LP/J	MGP_LPJ_G0000236	pseudogenic gene segment	Chr12:117667645-117668078 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000206	pseudogenic gene segment	Chr12:129512020-129512453 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000282	pseudogenic gene segment	Chr12:115869540-115869972 (-)
PWK/PhJ	MGP_PWKPhJ_G0000164	pseudogenic gene segment	Chr12:107104870-107105303 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0000159	pseudogenic gene segment	Chr12:109984557-109984978 (-)
WSB/EiJ	MGP_WSBEiJ_G0000209	pseudogenic gene segment	Chr12:116915899-116916332 (-)

Homology

• Gene Tree
  Ighv1-45
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000102528 (Evidence)
• NCBI Gene
  780894

Representative Sequences			Length	Strain/Species
genomic	780894	NCBI Gene Model | MGI Sequence Detail	294	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;