Ighv8-3 Pseudogene Detail

Summary

• Symbol
  Ighv8-3
• Name
  immunoglobulin heavy variable V8-3

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009915
  NCBI Gene: 780927
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:114967038-114967332 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 62.48 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  228 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009915	pseudogenic gene segment	Chr12:114967038-114967332 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0000227	pseudogenic gene segment	Chr12:117746647-117746947 (-)
A/J	no annotation
AKR/J	MGP_AKRJ_G0000202	pseudogenic gene segment	Chr12:116675000-116675300 (-)
BALB/cJ	MGP_BALBcJ_G0000201	pseudogenic gene segment	Chr12:113887812-113888112 (-)
C3H/HeJ	MGP_C3HHeJ_G0000198	pseudogenic gene segment	Chr12:116952864-116953164 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0000294	pseudogenic gene segment	Chr12:121354938-121355232 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000114	pseudogenic gene segment	Chr12:109224916-109225215 (-)
CAST/EiJ	MGP_CASTEiJ_G0000201	pseudogenic gene segment	Chr12:111600534-111600833 (-)
CBA/J	MGP_CBAJ_G0000191	pseudogenic gene segment	Chr12:126022887-126023187 (-)
DBA/2J	MGP_DBA2J_G0000191	pseudogenic gene segment	Chr12:112751946-112752246 (-)
FVB/NJ	MGP_FVBNJ_G0000198	pseudogenic gene segment	Chr12:111495905-111496205 (-)
LP/J	MGP_LPJ_G0000238	pseudogenic gene segment	Chr12:117702388-117702682 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000208	pseudogenic gene segment	Chr12:129551449-129551743 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000284	pseudogenic gene segment	Chr12:115914221-115914521 (-)
PWK/PhJ	MGP_PWKPhJ_G0000166	pseudogenic gene segment	Chr12:107143940-107144240 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0000211	pseudogenic gene segment	Chr12:116954480-116954780 (-)

Homology

• Gene Tree
  Ighv8-3
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000103990 (Evidence)
• NCBI Gene
  780927

Representative Sequences			Length	Strain/Species
genomic	780927	NCBI Gene Model | MGI Sequence Detail	295	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;