Trav15d-3 Pseudogene Detail

Summary

• Symbol
  Trav15d-3
• Name
  T cell receptor alpha variable 15D-3

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009955
  NCBI Gene: 100101934
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:53319811-53319977 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.22 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  16 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009955	pseudogenic gene segment	Chr14:53319520-53319979 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002618	pseudogenic gene segment	Chr14:47660286-47660452 (+)
A/J	no annotation
AKR/J	MGP_AKRJ_G0002574	pseudogenic gene segment	Chr14:48443498-48443664 (+)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0002541	pseudogenic gene segment	Chr14:48124181-48124347 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002720	pseudogenic gene segment	Chr14:50117636-50117802 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002271	pseudogenic gene segment	Chr14:45214727-45214893 (+)
CAST/EiJ	MGP_CASTEiJ_G0002516	pseudogenic gene segment	Chr14:44388908-44389074 (+)
CBA/J	MGP_CBAJ_G0002533	pseudogenic gene segment	Chr14:51069763-51072612 (+)
DBA/2J	MGP_DBA2J_G0002540	pseudogenic gene segment	Chr14:46502256-46502422 (+)
FVB/NJ	MGP_FVBNJ_G0002568	pseudogenic gene segment	Chr14:45983316-45983591 (+)
LP/J	MGP_LPJ_G0002620	pseudogenic gene segment	Chr14:48697753-48698423 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0002730	pseudogenic gene segment	Chr14:47647797-47647963 (+)
PWK/PhJ	MGP_PWKPhJ_G0002473	pseudogenic gene segment	Chr14:43025273-43025439 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002430	pseudogenic gene segment	Chr14:45945999-45946165 (+)
WSB/EiJ	MGP_WSBEiJ_G0002544	pseudogenic gene segment	Chr14:47961214-47961380 (+)

Homology

• Gene Tree
  Trav15d-3
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Trav15d-3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000106481 (Evidence)
• NCBI Gene
  100101934

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106481	Ensembl Gene Model | MGI Sequence Detail	167	C57BL/6J
transcript	ENSMUST00000198604	Ensembl | MGI Sequence Detail	167	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;