Trav12-4 Pseudogene Detail

Summary

• Symbol
  Trav12-4
• Name
  T cell receptor alpha variable 12-4

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009956
  NCBI Gene: 100101936
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:54016060-54016302 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.51 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  150 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009956	pseudogenic gene segment	Chr14:54016060-54016330 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002619	pseudogenic gene segment	Chr14:47677218-47677479 (+)
A/J	MGP_AJ_G0002591	pseudogenic gene segment	Chr14:46782166-46782427 (+)
AKR/J	MGP_AKRJ_G0002576	pseudogenic gene segment	Chr14:48473207-48473468 (+)
BALB/cJ	MGP_BALBcJ_G0002579	pseudogenic gene segment	Chr14:46757185-46757446 (+)
C3H/HeJ	MGP_C3HHeJ_G0002542	pseudogenic gene segment	Chr14:48142104-48142365 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002722	pseudogenic gene segment	Chr14:50136195-50136465 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002273	pseudogenic gene segment	Chr14:45227528-45227798 (+)
CAST/EiJ	MGP_CASTEiJ_G0002518	pseudogenic gene segment	Chr14:44401110-44401380 (+)
CBA/J	MGP_CBAJ_G0002538	pseudogenic gene segment	Chr14:51586623-51586884 (+)
DBA/2J	MGP_DBA2J_G0002541	pseudogenic gene segment	Chr14:46516891-46517152 (+)
FVB/NJ	MGP_FVBNJ_G0002569	pseudogenic gene segment	Chr14:45998565-45998826 (+)
LP/J	MGP_LPJ_G0002621	pseudogenic gene segment	Chr14:48711309-48711570 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002551	pseudogenic gene segment	Chr14:51047477-51047738 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002732	pseudogenic gene segment	Chr14:47662436-47662697 (+)
PWK/PhJ	MGP_PWKPhJ_G0002475	pseudogenic gene segment	Chr14:43059331-43059592 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002425	pseudogenic gene segment	Chr14:43637679-43637922 (+)
WSB/EiJ	MGP_WSBEiJ_G0002546	pseudogenic gene segment	Chr14:47972754-47973024 (+)

Homology

• Gene Tree
  Trav12-4
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Trav12-4
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000105380 (Evidence)
• NCBI Gene
  100101936

Representative Sequences			Length	Strain/Species
genomic	100101936	NCBI Gene Model | MGI Sequence Detail	243	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;