Trdv3 Pseudogene Detail

Summary

• Symbol
  Trdv3
• Name
  T cell receptor delta variable 3

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009960
  NCBI Gene: 100114900
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:54238405-54238710 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.60 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  31 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009960	pseudogenic gene segment	Chr14:54238405-54238724 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002622	pseudogenic gene segment	Chr14:47930771-47931073 (+)
A/J	MGP_AJ_G0002594	pseudogenic gene segment	Chr14:47021903-47022205 (+)
AKR/J	MGP_AKRJ_G0002579	pseudogenic gene segment	Chr14:48713479-48713781 (+)
BALB/cJ	MGP_BALBcJ_G0002582	pseudogenic gene segment	Chr14:46985665-46985967 (+)
C3H/HeJ	MGP_C3HHeJ_G0002545	pseudogenic gene segment	Chr14:48400649-48400951 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002725	pseudogenic gene segment	Chr14:50376834-50377142 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002276	pseudogenic gene segment	Chr14:45441625-45441904 (+)
CAST/EiJ	MGP_CASTEiJ_G0002521	pseudogenic gene segment	Chr14:44638942-44639249 (+)
CBA/J	MGP_CBAJ_G0002541	pseudogenic gene segment	Chr14:51861889-51862191 (+)
DBA/2J	MGP_DBA2J_G0002544	pseudogenic gene segment	Chr14:46753611-46753913 (+)
FVB/NJ	MGP_FVBNJ_G0002572	pseudogenic gene segment	Chr14:46222375-46222677 (+)
LP/J	MGP_LPJ_G0002624	pseudogenic gene segment	Chr14:48950791-48951093 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002554	pseudogenic gene segment	Chr14:51326334-51326636 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002735	pseudogenic gene segment	Chr14:47904729-47905031 (+)
PWK/PhJ	MGP_PWKPhJ_G0002478	pseudogenic gene segment	Chr14:43289006-43289308 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002428	pseudogenic gene segment	Chr14:43881041-43881300 (+)
WSB/EiJ	MGP_WSBEiJ_G0002549	pseudogenic gene segment	Chr14:48200171-48200473 (+)

Homology

• Gene Tree
  Trdv3
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Trdv3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000105823 (Evidence)
• NCBI Gene
  100114900

Representative Sequences			Length	Strain/Species
genomic	100114900	NCBI Gene Model | MGI Sequence Detail	306	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;