Trbv8 Pseudogene Detail

Summary

• Symbol
  Trbv8
• Name
  T cell receptor beta variable 8

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009964
  NCBI Gene: 100124664
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:41061755-41062039 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 19.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009964	pseudogenic gene segment	Chr6:41061603-41062041 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002625	pseudogenic gene segment	Chr6:39559874-39560158 (+)
A/J	MGP_AJ_G0002597	pseudogenic gene segment	Chr6:37838438-37838722 (+)
AKR/J	MGP_AKRJ_G0002582	pseudogenic gene segment	Chr6:39039824-39040108 (+)
BALB/cJ	MGP_BALBcJ_G0002585	pseudogenic gene segment	Chr6:38051058-38051342 (+)
C3H/HeJ	MGP_C3HHeJ_G0002548	pseudogenic gene segment	Chr6:39062059-39062343 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002728	pseudogenic gene segment	Chr6:40551324-40551608 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002279	pseudogenic gene segment	Chr6:35627004-35627285 (+)
CAST/EiJ	MGP_CASTEiJ_G0002525	pseudogenic gene segment	Chr6:38958574-38958858 (+)
CBA/J	MGP_CBAJ_G0002544	pseudogenic gene segment	Chr6:42180860-42181144 (+)
DBA/2J	MGP_DBA2J_G0002547	pseudogenic gene segment	Chr6:37652822-37653106 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0002627	pseudogenic gene segment	Chr6:39570820-39571104 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002557	pseudogenic gene segment	Chr6:44428727-44429011 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002738	pseudogenic gene segment	Chr6:39004640-39004924 (+)
PWK/PhJ	MGP_PWKPhJ_G0002481	pseudogenic gene segment	Chr6:37276812-37277096 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0002552	pseudogenic gene segment	Chr6:38947656-38947940 (+)

Homology

• Gene Tree
  Trbv8
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000102821 (Evidence)
• NCBI Gene
  100124664

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102821	Ensembl Gene Model | MGI Sequence Detail	285	C57BL/6J
transcript	ENSMUST00000194020	Ensembl | MGI Sequence Detail	285	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;