Trbv25 Pseudogene Detail

Summary

• Symbol
  Trbv25
• Name
  T cell receptor beta variable 25

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009969
  NCBI Gene: 100124690
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:41198865-41199137 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 19.32 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  115 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009969	pseudogenic gene segment	Chr6:41198608-41199144 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002633	pseudogenic gene segment	Chr6:39704685-39704957 (+)
A/J	MGP_AJ_G0002605	pseudogenic gene segment	Chr6:37975865-37976137 (+)
AKR/J	MGP_AKRJ_G0002590	pseudogenic gene segment	Chr6:39183149-39183421 (+)
BALB/cJ	MGP_BALBcJ_G0002593	pseudogenic gene segment	Chr6:38193690-38193962 (+)
C3H/HeJ	MGP_C3HHeJ_G0002556	pseudogenic gene segment	Chr6:39209866-39210138 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002736	pseudogenic gene segment	Chr6:40680636-40680908 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002286	pseudogenic gene segment	Chr6:35768099-35768371 (+)
CAST/EiJ	MGP_CASTEiJ_G0002532	pseudogenic gene segment	Chr6:39111731-39112003 (+)
CBA/J	MGP_CBAJ_G0002552	pseudogenic gene segment	Chr6:42345855-42346127 (+)
DBA/2J	MGP_DBA2J_G0002555	pseudogenic gene segment	Chr6:37788298-37788570 (+)
FVB/NJ	MGP_FVBNJ_G0002576	pseudogenic gene segment	Chr6:37541085-37541560 (+)
LP/J	MGP_LPJ_G0002635	pseudogenic gene segment	Chr6:39710882-39711154 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002565	pseudogenic gene segment	Chr6:44587327-44587599 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002746	pseudogenic gene segment	Chr6:39160251-39160523 (+)
PWK/PhJ	MGP_PWKPhJ_G0002489	pseudogenic gene segment	Chr6:37413605-37413877 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002441	pseudogenic gene segment	Chr6:38856564-38856836 (+)
WSB/EiJ	MGP_WSBEiJ_G0002560	pseudogenic gene segment	Chr6:39091753-39092025 (+)

Homology

• Gene Tree
  Trbv25
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000104473 (Evidence)
• NCBI Gene
  100124690

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104473	Ensembl Gene Model | MGI Sequence Detail	273	C57BL/6J
transcript	ENSMUST00000194700	Ensembl | MGI Sequence Detail	273	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;