Trav3-2 Pseudogene Detail

Summary

• Symbol
  Trav3-2
• Name
  T cell receptor alpha variable 3-2

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009976
  NCBI Gene: 100126470
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:53823957-53824421 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.43 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  98 from dbSNP Build 142
• Strain Annotations
  9

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009976	pseudogenic gene segment	Chr14:53823928-53824421 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0002572	pseudogenic gene segment	Chr14:45819952-45820440 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0002715	pseudogenic gene segment	Chr14:49414192-49414656 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0002512	pseudogenic gene segment	Chr14:44198562-44199029 (+)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0002535	pseudogenic gene segment	Chr14:45468358-45468846 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0002617	pseudogenic gene segment	Chr14:48437239-48437681 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002544	pseudogenic gene segment	Chr14:49991272-49991577 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002720	pseudogenic gene segment	Chr14:46706763-46707313 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0002539	pseudogenic gene segment	Chr14:47063792-47064076 (+)

Homology

• Gene Tree
  Trav3-2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Trav3-2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  1

• Ensembl
  ENSMUSG00000104738 (Evidence)
• NCBI Gene
  100126470

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104738	Ensembl Gene Model | MGI Sequence Detail	465	C57BL/6J
transcript	ENSMUST00000198999	Ensembl | MGI Sequence Detail	305	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;