Gm17797 Pseudogene Detail

Summary

• Symbol
  Gm17797
• Name
  predicted gene, 17797

• Feature Type
  pseudogene
• IDs
  MGI:5009983
  NCBI Gene: 100151689
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:92538758-92539754 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 41.11 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009983	pseudogene	Chr6:92538740-92539945 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013600	pseudogene	Chr6:94217366-94218362 (+)
A/J	MGP_AJ_G0013581	pseudogene	Chr6:90631174-90632170 (+)
AKR/J	MGP_AKRJ_G0013543	pseudogene	Chr6:93133957-93134953 (+)
BALB/cJ	MGP_BALBcJ_G0013562	pseudogene	Chr6:90588274-90589270 (+)
C3H/HeJ	MGP_C3HHeJ_G0013376	pseudogene	Chr6:91293666-91294662 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013947	pseudogene	Chr6:96629109-96630105 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013103	pseudogene	Chr6:93276144-93277140 (+)
CBA/J	MGP_CBAJ_G0013381	pseudogene	Chr6:100228566-100229562 (+)
DBA/2J	MGP_DBA2J_G0013461	pseudogene	Chr6:89800345-89801341 (+)
FVB/NJ	MGP_FVBNJ_G0013460	pseudogene	Chr6:89018946-89019942 (+)
LP/J	MGP_LPJ_G0013538	pseudogene	Chr6:94166026-94167022 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013473	pseudogene	Chr6:104247944-104248940 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013938	pseudogene	Chr6:92992652-92993648 (+)
PWK/PhJ	MGP_PWKPhJ_G0012907	pseudogene	Chr6:88765656-88766652 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012689	pseudogene	Chr6:91898849-91899844 (+)
WSB/EiJ	MGP_WSBEiJ_G0013151	pseudogene	Chr6:93459122-93460118 (+)

Homology

• Gene Tree
  Gm17797
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000098130 (Evidence)
• NCBI Gene
  100151689

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098130	Ensembl Gene Model | MGI Sequence Detail	997	C57BL/6J
transcript	ENSMUST00000182175	Ensembl | MGI Sequence Detail	997	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;