Gm17798 Pseudogene Detail

Summary

• Symbol
  Gm17798
• Name
  predicted gene, 17798

• Feature Type
  pseudogene
• IDs
  MGI:5009984
  NCBI Gene: 100151690
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:38096089-38097123 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 20.84 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  189 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009984	pseudogene	Chr9:38096072-38097325 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014137	pseudogene	Chr9:36232932-36233966 (+)
A/J	MGP_AJ_G0014157	pseudogene	Chr9:35277750-35278784 (+)
AKR/J	MGP_AKRJ_G0014079	pseudogene	Chr9:36035282-36036316 (+)
BALB/cJ	MGP_BALBcJ_G0014105	pseudogene	Chr9:35096152-35097186 (+)
C3H/HeJ	MGP_C3HHeJ_G0013937	pseudogene	Chr9:36470459-36471493 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014550	pseudogene	Chr9:37370984-37372018 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013595	pseudogene	Chr9:36145426-36146461 (+)
CBA/J	MGP_CBAJ_G0013920	pseudogene	Chr9:38696064-38697085 (+)
DBA/2J	MGP_DBA2J_G0014002	pseudogene	Chr9:35323849-35324883 (+)
FVB/NJ	MGP_FVBNJ_G0014003	pseudogene	Chr9:34547291-34548312 (+)
LP/J	MGP_LPJ_G0014085	pseudogene	Chr9:36403958-36404992 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014032	pseudogene	Chr9:40324019-40325040 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014522	pseudogene	Chr9:35955837-35956871 (+)
PWK/PhJ	MGP_PWKPhJ_G0013410	pseudogene	Chr9:35185547-35186582 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013194	pseudogene	Chr9:36176335-36177374 (+)
WSB/EiJ	MGP_WSBEiJ_G0013653	pseudogene	Chr9:35784634-35785655 (+)

Homology

• Gene Tree
  Gm17798
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000098147 (Evidence)
• NCBI Gene
  100151690

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098147	Ensembl Gene Model | MGI Sequence Detail	1035	C57BL/6J
transcript	ENSMUST00000182282	Ensembl | MGI Sequence Detail	1035	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;