Gm17812 Pseudogene Detail

Summary

• Symbol
  Gm17812
• Name
  predicted gene, 17812

• Feature Type
  pseudogene
• IDs
  MGI:5009997
  NCBI Gene: 100302653
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:120885634-120885951 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 57.03 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  15 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009997	pseudogene	Chr6:120885550-120886537 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013695	pseudogene	Chr6:127556226-127556543 (+)
A/J	MGP_AJ_G0013682	pseudogene	Chr6:122689014-122689365 (+)
AKR/J	MGP_AKRJ_G0011279	pseudogene	Chr17:21832924-21833246 (+)
BALB/cJ	MGP_BALBcJ_G0013639	pseudogene	Chr6:118822271-118822588 (+)
C3H/HeJ	MGP_C3HHeJ_G0011180	pseudogene	Chr17:22199846-22200168 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014027	pseudogene	Chr6:126998796-127001104 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013192	pseudogene	Chr6:126382981-126383257 (+)
CBA/J	MGP_CBAJ_G0011162	pseudogene	Chr17:24155697-24156019 (+)
DBA/2J	MGP_DBA2J_G0011213	pseudogene	Chr17:21401267-21401589 (+)
FVB/NJ	MGP_FVBNJ_G0011214	pseudogene	Chr17:21117356-21117678 (+)
LP/J	MGP_LPJ_G0013614	pseudogene	Chr6:123819786-123825196 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011209	pseudogene	Chr17:23955367-23955689 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014020	pseudogene	Chr6:122303768-122304085 (+)
PWK/PhJ	MGP_PWKPhJ_G0012978	pseudogene	Chr6:116992182-116993566 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012763	pseudogene	Chr6:121045589-121045906 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm17812
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000108125 (Evidence)
• NCBI Gene
  100302653

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108125	Ensembl Gene Model | MGI Sequence Detail	318	C57BL/6J
transcript	ENSMUST00000204935	Ensembl | MGI Sequence Detail	318	Not Applicable

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;