Gm17868 Pseudogene Detail

Summary

• Symbol
  Gm17868
• Name
  predicted gene, 17868

• Feature Type
  pseudogene
• IDs
  MGI:5010053
  NCBI Gene: 100416009
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:166968724-166969391 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 74.52 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  120 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010053	pseudogene	Chr1:166968699-166969391 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039923	pseudogene	Chr1:172690505-172691172 (+)
A/J	no annotation
AKR/J	MGP_AKRJ_G0040195	pseudogene	Chr2:155957038-155957705 (-)
BALB/cJ	MGP_BALBcJ_G0040260	pseudogene	Chr2:151838228-151838895 (-)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0037283	pseudogene	Chr2:145106552-145107219 (-)
CAST/EiJ	MGP_CASTEiJ_G0038979	pseudogene	Chr2:156585304-156585971 (-)
CBA/J	MGP_CBAJ_G0039863	pseudogene	Chr2:168399245-168399912 (-)
DBA/2J	MGP_DBA2J_G0040061	pseudogene	Chr2:150736277-150736944 (-)
FVB/NJ	MGP_FVBNJ_G0040018	pseudogene	Chr2:149204819-149205486 (-)
LP/J	MGP_LPJ_G0040109	pseudogene	Chr2:157988465-157989132 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0040014	pseudogene	Chr2:172445321-172445988 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040574	pseudogene	Chr1:170523428-170526362 (+)
PWK/PhJ	MGP_PWKPhJ_G0038675	pseudogene	Chr2:150270941-150271608 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0038369	pseudogene	Chr2:154687248-154687915 (-)
WSB/EiJ	MGP_WSBEiJ_G0039202	pseudogene	Chr2:156751972-156752639 (-)

Homology

• Gene Tree
  Gm17868
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Gene trapped
  1
• Genomic Mutations
  2 involving Gm17868
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000102870 (Evidence)
• NCBI Gene
  100416009

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102870	Ensembl Gene Model | MGI Sequence Detail	668	C57BL/6J
transcript	ENSMUST00000192761	Ensembl | MGI Sequence Detail	668	Not Applicable

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9