Gm17888 Pseudogene Detail

Summary

• Symbol
  Gm17888
• Name
  predicted gene, 17888

• Feature Type
  pseudogene
• IDs
  MGI:5010073
  NCBI Gene: 100416043
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  ChrX:107528224-107529033 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 47.81 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010073	pseudogene	ChrX:107528224-107529033 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  100416043

Representative Sequences			Length	Strain/Species
genomic	100416043	NCBI Gene Model | MGI Sequence Detail	810	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm17888:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161837	ChrX:107527998-107528026 (+)	-212 bp
Tssr161838	ChrX:107528027-107528038 (+)	-191 bp
Tssr161839	ChrX:107528041-107528046 (+)	-180 bp