Gm17971 Pseudogene Detail

Summary

• Symbol
  Gm17971
• Name
  predicted gene, 17971

• Feature Type
  pseudogene
• IDs
  MGI:5010156
  NCBI Gene: 100416214
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:55105423-55106228 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 28.01 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  132 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010156	pseudogene	Chr1:55105412-55106267 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010140	pseudogene	Chr1:54776493-54777298 (+)
A/J	MGP_AJ_G0010128	pseudogene	Chr1:52872744-52873549 (+)
AKR/J	MGP_AKRJ_G0010106	pseudogene	Chr1:54308742-54309547 (+)
BALB/cJ	MGP_BALBcJ_G0010116	pseudogene	Chr1:52923308-52924113 (+)
C3H/HeJ	MGP_C3HHeJ_G0010045	pseudogene	Chr1:54552836-54553641 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010364	pseudogene	Chr1:57044481-57045286 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009115	pseudogene	Chr1:48968959-48969781 (+)
CAST/EiJ	MGP_CASTEiJ_G0009879	pseudogene	Chr1:53826915-53827722 (+)
CBA/J	MGP_CBAJ_G0010015	pseudogene	Chr1:58656712-58657517 (+)
DBA/2J	MGP_DBA2J_G0010042	pseudogene	Chr1:52298701-52299506 (+)
FVB/NJ	MGP_FVBNJ_G0010065	pseudogene	Chr1:51647524-51648296 (+)
LP/J	MGP_LPJ_G0010131	pseudogene	Chr1:55604909-55605714 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010025	pseudogene	Chr1:61763722-61764527 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010342	pseudogene	Chr1:54259427-54260232 (+)
PWK/PhJ	MGP_PWKPhJ_G0009782	pseudogene	Chr1:51655999-51656804 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009599	pseudogene	Chr1:53886686-53890036 (+)
WSB/EiJ	MGP_WSBEiJ_G0009943	pseudogene	Chr1:53942940-53943745 (+)

Homology

• Gene Tree
  Gm17971
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm17971
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000101122 (Evidence)
• NCBI Gene
  100416214

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101122	Ensembl Gene Model | MGI Sequence Detail	806	C57BL/6J
transcript	ENSMUST00000190239	Ensembl | MGI Sequence Detail	806	Not Applicable

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45