Gm18006 Pseudogene Detail

Summary

• Symbol
  Gm18006
• Name
  predicted gene, 18006

• Feature Type
  pseudogene
• IDs
  MGI:5010191
  NCBI Gene: 100416261
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:6645334-6647278 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 2.59 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  184 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010191	pseudogene	Chr6:6645333-6647279 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013346	pseudogene	Chr6:3557696-3559840 (-)
A/J	MGP_AJ_G0013329	pseudogene	Chr6:3414599-3417434 (-)
AKR/J	MGP_AKRJ_G0013289	pseudogene	Chr6:3518016-3522007 (-)
BALB/cJ	MGP_BALBcJ_G0013307	pseudogene	Chr6:3363066-3365790 (-)
C3H/HeJ	MGP_C3HHeJ_G0013155	pseudogene	Chr6:3471799-3472596 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013678	pseudogene	Chr6:3640771-3641494 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0013124	pseudogene	Chr6:3801928-3806078 (-)
DBA/2J	MGP_DBA2J_G0013209	pseudogene	Chr6:3359994-3363668 (-)
FVB/NJ	MGP_FVBNJ_G0013205	pseudogene	Chr6:3341336-3344431 (-)
LP/J	MGP_LPJ_G0013277	pseudogene	Chr6:3504902-3510126 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013224	pseudogene	Chr6:3820513-3821900 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013680	pseudogene	Chr6:3471226-3472358 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0012913	pseudogene	Chr6:3455164-3457125 (-)

Homology

• Gene Tree
  Gm18006
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000093581 (Evidence)
• NCBI Gene
  100416261

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093581	Ensembl Gene Model | MGI Sequence Detail	1945	C57BL/6J
transcript	ENSMUST00000177411	Ensembl | MGI Sequence Detail	662	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;