Gm18222 Pseudogene Detail

Summary

• Symbol
  Gm18222
• Name
  predicted gene, 18222

• Feature Type
  pseudogene
• IDs
  MGI:5010407
  NCBI Gene: 100416743
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:3318530-3319916 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 1.73 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  105 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010407	pseudogene	Chr6:3318508-3319924 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0013319	pseudogene	Chr6:11093-12574 (+)
AKR/J	MGP_AKRJ_G0013281	pseudogene	Chr6:9928-11292 (+)
BALB/cJ	MGP_BALBcJ_G0013297	pseudogene	Chr6:19929-21353 (+)
C3H/HeJ	MGP_C3HHeJ_G0013145	pseudogene	Chr6:14436-15800 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013666	pseudogene	Chr6:5742-8349 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012294	pseudogene	Chr4:71363040-71364317 (+)
CBA/J	MGP_CBAJ_G0013114	pseudogene	Chr6:23670-25076 (+)
DBA/2J	MGP_DBA2J_G0013199	pseudogene	Chr6:1586-2959 (+)
FVB/NJ	MGP_FVBNJ_G0013195	pseudogene	Chr6:10622-15410 (+)
LP/J	MGP_LPJ_G0013267	pseudogene	Chr6:10099-11627 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013214	pseudogene	Chr6:6501-7907 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013669	pseudogene	Chr6:23250-24446 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm18222
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000107184 (Evidence)
• NCBI Gene
  100416743

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107184	Ensembl Gene Model | MGI Sequence Detail	1387	C57BL/6J
transcript	ENSMUST00000202416	Ensembl | MGI Sequence Detail	1387	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;