Gm18407 Pseudogene Detail

Summary

• Symbol
  Gm18407
• Name
  predicted gene, 18407

• Feature Type
  pseudogene
• IDs
  MGI:5010592
  NCBI Gene: 100417122
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:165471468-165472257 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 72.99 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  152 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010592	pseudogene	Chr1:165471442-165472274 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010424	pseudogene	Chr1:171136900-171137689 (-)
A/J	MGP_AJ_G0010414	pseudogene	Chr1:164152652-164153441 (-)
AKR/J	MGP_AKRJ_G0010382	pseudogene	Chr1:169116765-169117554 (-)
BALB/cJ	MGP_BALBcJ_G0010389	pseudogene	Chr1:164649186-164649975 (-)
C3H/HeJ	MGP_C3HHeJ_G0010321	pseudogene	Chr1:169339975-169340764 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010662	pseudogene	Chr1:176876578-176877367 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009341	pseudogene	Chr1:156051642-156052433 (-)
CAST/EiJ	MGP_CASTEiJ_G0010143	pseudogene	Chr1:168962592-168963381 (-)
CBA/J	MGP_CBAJ_G0010291	pseudogene	Chr1:183145699-183146488 (-)
DBA/2J	MGP_DBA2J_G0010322	pseudogene	Chr1:163035829-163036617 (-)
FVB/NJ	MGP_FVBNJ_G0010347	pseudogene	Chr1:161475811-161476600 (-)
LP/J	MGP_LPJ_G0010407	pseudogene	Chr1:172198817-172199606 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010304	pseudogene	Chr1:190655580-190656369 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010627	pseudogene	Chr1:168978378-168979167 (-)
PWK/PhJ	MGP_PWKPhJ_G0010044	pseudogene	Chr1:162241387-162242175 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0009858	pseudogene	Chr1:167830983-167831767 (-)
WSB/EiJ	MGP_WSBEiJ_G0010211	pseudogene	Chr1:169130606-169131338 (-)

Homology

• Gene Tree
  Gm18407
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm18407
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000104517 (Evidence)
• NCBI Gene
  100417122

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104517	Ensembl Gene Model | MGI Sequence Detail	790	C57BL/6J
transcript	ENSMUST00000192126	Ensembl | MGI Sequence Detail	790	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;