Gm18529 Pseudogene Detail

Summary

• Symbol
  Gm18529
• Name
  predicted gene, 18529

• Feature Type
  pseudogene
• IDs
  MGI:5010714
  NCBI Gene: 100417318
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr18:37438588-37439585 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 19.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  173 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010714	pseudogene	Chr18:37438588-37439844 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011435	pseudogene	Chr18:35699766-35701029 (+)
A/J	MGP_AJ_G0011428	pseudogene	Chr18:34492945-34494209 (+)
AKR/J	MGP_AKRJ_G0011392	pseudogene	Chr18:35446021-35447285 (+)
BALB/cJ	MGP_BALBcJ_G0011407	pseudogene	Chr18:34521899-34523163 (+)
C3H/HeJ	MGP_C3HHeJ_G0011294	pseudogene	Chr18:35506877-35508140 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011700	pseudogene	Chr18:36997468-36998724 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010257	pseudogene	Chr18:34551589-34552878 (+)
CAST/EiJ	MGP_CASTEiJ_G0011102	pseudogene	Chr18:35472338-35473595 (+)
CBA/J	MGP_CBAJ_G0011270	pseudogene	Chr18:38084723-38085987 (+)
DBA/2J	MGP_DBA2J_G0011323	pseudogene	Chr18:34083414-34084678 (+)
FVB/NJ	MGP_FVBNJ_G0011330	pseudogene	Chr18:33803984-33805247 (+)
LP/J	MGP_LPJ_G0011395	pseudogene	Chr18:35790902-35792165 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011322	pseudogene	Chr18:39351197-39352460 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011686	pseudogene	Chr18:35300941-35302204 (+)
PWK/PhJ	MGP_PWKPhJ_G0010964	pseudogene	Chr18:34319602-34320858 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010786	pseudogene	Chr18:35548530-35549794 (+)
WSB/EiJ	MGP_WSBEiJ_G0011133	pseudogene	Chr18:35201258-35202522 (+)

Homology

• Gene Tree
  Gm18529
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  4
• Endonuclease-mediated
  1
• Targeted
  3
• Genomic Mutations
  4 involving Gm18529
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000104264 (Evidence)
• NCBI Gene
  100417318

Representative Sequences			Length	Strain/Species
genomic	100417318	NCBI Gene Model | MGI Sequence Detail	998	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:244163 Hasegawa S, et al., Distinct and Cooperative Functions for the Protocadherin-alpha, -beta and -gamma Clusters in Neuronal Survival and Axon Targeting. Front Mol Neurosci. 2016;9:155
• Latest
  J:313451 Xu L, et al., Abnormal neocortex arealization and Sotos-like syndrome-associated behavior in Setd2 mutant mice. Sci Adv. 2021 Jan;7(1)