Gm18599 Pseudogene Detail

Summary

• Symbol
  Gm18599
• Name
  predicted gene, 18599

• Feature Type
  pseudogene
• IDs
  MGI:5010784
  NCBI Gene: 100417415
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:114297755-114298879 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 60.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  110 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010784	pseudogene	Chr7:114297740-114298883 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013992	pseudogene	Chr7:118375790-118376914 (-)
A/J	MGP_AJ_G0014012	pseudogene	Chr7:115406263-115407387 (-)
AKR/J	MGP_AKRJ_G0013945	pseudogene	Chr7:118320519-118321643 (-)
BALB/cJ	MGP_BALBcJ_G0013968	pseudogene	Chr7:115106971-115108097 (-)
C3H/HeJ	MGP_C3HHeJ_G0013804	pseudogene	Chr7:118286983-118288109 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014399	pseudogene	Chr7:123125353-123126477 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012245	pseudogene	Chr7:116925236-116926383 (-)
CAST/EiJ	MGP_CASTEiJ_G0013460	pseudogene	Chr7:109936066-109937192 (-)
CBA/J	MGP_CBAJ_G0013784	pseudogene	Chr7:127230930-127232056 (-)
DBA/2J	MGP_DBA2J_G0013860	pseudogene	Chr7:113450771-113451897 (-)
FVB/NJ	MGP_FVBNJ_G0013861	pseudogene	Chr7:113317739-113318863 (-)
LP/J	MGP_LPJ_G0013938	pseudogene	Chr7:119880421-119881545 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013887	pseudogene	Chr7:128839980-128841106 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014366	pseudogene	Chr7:117299231-117300357 (-)
PWK/PhJ	MGP_PWKPhJ_G0013274	pseudogene	Chr7:106331979-106333105 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013040	pseudogene	Chr7:104041409-104042546 (-)
WSB/EiJ	MGP_WSBEiJ_G0013523	pseudogene	Chr7:118171043-118172167 (-)

Homology

• Gene Tree
  Gm18599
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm18599
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000108349 (Evidence)
• NCBI Gene
  100417415

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108349	Ensembl Gene Model | MGI Sequence Detail	1125	C57BL/6J
transcript	ENSMUST00000206729	Ensembl | MGI Sequence Detail	1125	Not Applicable

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:61682 Hagiwara N, et al., Sox6 is a candidate gene for p100H myopathy, heart block, and sudden neonatal death. Proc Natl Acad Sci U S A. 2000 Apr 11;97(8):4180-5
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67