Gm18800 Pseudogene Detail

Summary

• Symbol
  Gm18800
• Name
  predicted gene, 18800

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5010985
  NCBI Gene: 100417745
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:53365340-53371883 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 26.99 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  356 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5010985	pseudogene	Chr1:53365340-53381345 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0039781	pseudogene	Chr1:51085774-51101944 (-)
AKR/J	MGP_AKRJ_G0039709	pseudogene	Chr1:52203383-52219909 (-)
BALB/cJ	MGP_BALBcJ_G0039755	pseudogene	Chr1:50910173-50945444 (-)
C3H/HeJ	MGP_C3HHeJ_G0039412	pseudogene	Chr1:52582256-52599171 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040316	pseudogene	Chr1:55049225-55065020 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036939	pseudogene	Chr1:40787248-40804665 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0039383	pseudogene	Chr1:56552742-56574337 (-)
DBA/2J	MGP_DBA2J_G0039581	pseudogene	Chr1:50358491-50375612 (-)
FVB/NJ	MGP_FVBNJ_G0039539	pseudogene	Chr1:49813351-49833215 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0039539	pseudogene	Chr1:59627939-59649257 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040423	pseudogene	Chr1:52308426-52328929 (-)
PWK/PhJ	MGP_PWKPhJ_G0038206	pseudogene	Chr1:50192607-50224832 (-)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm18800
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000101838 (Evidence), ENSMUSG00000121346 (Evidence)
• NCBI Gene
  100417745

Representative Sequences			Length	Strain/Species
genomic	100417745	NCBI Gene Model | MGI Sequence Detail	6544	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45