Gm18913 Pseudogene Detail

Summary

• Symbol
  Gm18913
• Name
  predicted gene, 18913

• Feature Type
  pseudogene
• IDs
  MGI:5011098
  NCBI Gene: 100417946
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr6:65409144-65410932 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 30.21 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  177 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011098	pseudogene	Chr6:65409036-65410986 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013501	pseudogene	Chr6:65346842-65348630 (+)
A/J	MGP_AJ_G0013487	pseudogene	Chr6:62499530-62501318 (+)
AKR/J	MGP_AKRJ_G0013454	pseudogene	Chr6:64456408-64458196 (+)
BALB/cJ	MGP_BALBcJ_G0013466	pseudogene	Chr6:62899193-62900981 (+)
C3H/HeJ	MGP_C3HHeJ_G0013471	pseudogene	Chr6:119733631-119735419 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013851	pseudogene	Chr6:66872063-66873851 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011923	pseudogene	Chr6:59808577-59810333 (+)
CAST/EiJ	MGP_CASTEiJ_G0013019	pseudogene	Chr6:64733280-64735053 (+)
CBA/J	MGP_CBAJ_G0013283	pseudogene	Chr6:69587057-69588845 (+)
DBA/2J	MGP_DBA2J_G0013367	pseudogene	Chr6:62197402-62199190 (+)
FVB/NJ	MGP_FVBNJ_G0013366	pseudogene	Chr6:61724078-61725866 (+)
LP/J	MGP_LPJ_G0013437	pseudogene	Chr6:65280520-65282308 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013385	pseudogene	Chr6:73346211-73347999 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013849	pseudogene	Chr6:64422625-64424413 (+)
PWK/PhJ	MGP_PWKPhJ_G0012826	pseudogene	Chr6:61335448-61337580 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012610	pseudogene	Chr6:63942991-63955318 (+)
WSB/EiJ	MGP_WSBEiJ_G0013066	pseudogene	Chr6:64710711-64712499 (+)

Homology

• Gene Tree
  Gm18913
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000107596 (Evidence)
• NCBI Gene
  100417946

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107596	Ensembl Gene Model | MGI Sequence Detail	1789	C57BL/6J
transcript	ENSMUST00000204311	Ensembl | MGI Sequence Detail	1789	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm18913:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr56821	Chr6:65409450-65409499 (+)	331 bp
Tssr56822	Chr6:65409854-65409882 (+)	724 bp
Tssr56823	Chr6:65410131-65410141 (+)	992 bp