Tprgl-ps1 Pseudogene Detail

Summary

• Symbol
  Tprgl-ps1
• Name
  transformation related protein 63 regulated like, pseudogene 1
• Synonyms
  Gm18958

• Feature Type
  pseudogene
• IDs
  MGI:5011143
  NCBI Gene: 100418081
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:84450242-84452371 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 48.37 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  197 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011143	pseudogene	Chr7:84450239-84453250 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040601	pseudogene	Chr7:86972470-86974609 (+)
A/J	MGP_AJ_G0040599	pseudogene	Chr7:84891305-84893599 (+)
AKR/J	MGP_AKRJ_G0040529	pseudogene	Chr7:86859639-86861771 (+)
BALB/cJ	MGP_BALBcJ_G0040590	pseudogene	Chr7:84562052-84564180 (+)
C3H/HeJ	MGP_C3HHeJ_G0040227	pseudogene	Chr7:87389267-87391396 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0041279	pseudogene	Chr7:90343496-90345618 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037453	pseudogene	Chr7:87215076-87217246 (+)
CAST/EiJ	MGP_CASTEiJ_G0039273	pseudogene	Chr7:78382571-78384715 (+)
CBA/J	MGP_CBAJ_G0040194	pseudogene	Chr7:93372165-93374297 (+)
DBA/2J	MGP_DBA2J_G0040406	pseudogene	Chr7:83385665-83387808 (+)
FVB/NJ	MGP_FVBNJ_G0040333	pseudogene	Chr7:83337390-83339512 (+)
LP/J	MGP_LPJ_G0040445	pseudogene	Chr7:88236640-88238780 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0040329	pseudogene	Chr7:93402900-93405024 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0041331	pseudogene	Chr7:86222744-86224887 (+)
PWK/PhJ	MGP_PWKPhJ_G0038940	pseudogene	Chr7:76638339-76640587 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0039525	pseudogene	Chr7:86610637-86612762 (+)

Homology

• Gene Tree
  Tprgl-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  24 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Radiation induced
  3
• Genomic Mutations
  4 involving Tprgl-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000092429 (Evidence)
• NCBI Gene
  100418081

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092429	Ensembl Gene Model | MGI Sequence Detail	2130	C57BL/6J
transcript	ENSMUST00000174258	Ensembl | MGI Sequence Detail	762	Not Applicable

Other
Accession IDs

MGI:6431138

References

• Summaries
  All 28

  Phenotypes 24
• Earliest
  J:141526 Russell LB, et al., Analysis of the albino-locus region of the mouse. III. Time of death of prenatal lethals. Genetics. 1979 May;92(1):205-13
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67