Gm19030 Pseudogene Detail

Summary

• Symbol
  Gm19030
• Name
  predicted gene, 19030

• Feature Type
  pseudogene
• IDs
  MGI:5011215
  NCBI Gene: 100418142
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:171557483-171558034 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 79.54 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  79 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011215	pseudogene	Chr1:171557483-171558034 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010441	pseudogene	Chr1:177571297-177571848 (+)
A/J	MGP_AJ_G0010430	pseudogene	Chr1:170300381-170300932 (+)
AKR/J	MGP_AKRJ_G0010399	pseudogene	Chr1:175446295-175446846 (+)
BALB/cJ	MGP_BALBcJ_G0010406	pseudogene	Chr1:170844642-170845193 (+)
C3H/HeJ	MGP_C3HHeJ_G0010337	pseudogene	Chr1:176020908-176021459 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010680	pseudogene	Chr1:183444972-183445523 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009358	pseudogene	Chr1:162021972-162022521 (+)
CAST/EiJ	MGP_CASTEiJ_G0010158	pseudogene	Chr1:175375880-175376431 (+)
CBA/J	MGP_CBAJ_G0010305	pseudogene	Chr1:189983873-189984424 (+)
DBA/2J	MGP_DBA2J_G0010336	pseudogene	Chr1:169240300-169240851 (+)
FVB/NJ	MGP_FVBNJ_G0010361	pseudogene	Chr1:167495307-167495858 (+)
LP/J	MGP_LPJ_G0010424	pseudogene	Chr1:178646770-178647321 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010323	pseudogene	Chr1:197271572-197272123 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010647	pseudogene	Chr1:175304927-175305478 (+)
PWK/PhJ	MGP_PWKPhJ_G0010060	pseudogene	Chr1:168617739-168618290 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009873	pseudogene	Chr1:174239446-174239997 (+)
WSB/EiJ	MGP_WSBEiJ_G0010230	pseudogene	Chr1:175475734-175476285 (+)

Homology

• Gene Tree
  Gm19030
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Targeted
  1
• Genomic Mutations
  3 involving Gm19030
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000104440 (Evidence)
• NCBI Gene
  100418142

Representative Sequences			Length	Strain/Species
genomic	100418142	NCBI Gene Model | MGI Sequence Detail	552	C57BL/6J

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:237231 Guo H, et al., Deletion of Slam locus in mice reveals inhibitory role of SLAM family in NK cell responses regulated by cytokines and LFA-1. J Exp Med. 2016 Sep 19;213(10):2187-207
• Latest
  J:328788 Tang Z, et al., Inflammatory macrophages exploit unconventional pro-phagocytic integrins for phagocytosis and anti-tumor immunity. Cell Rep. 2021 Dec 14;37(11):110111