Gm19040 Pseudogene Detail

Summary

• Symbol
  Gm19040
• Name
  predicted gene, 19040

• Feature Type
  pseudogene
• IDs
  MGI:5011225
  NCBI Gene: 100418154
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:114715494-114718736 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 53.05 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  214 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011225	pseudogene	Chr6:114715494-114720220 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013657	pseudogene	Chr6:117323428-117328154 (+)
A/J	MGP_AJ_G0013641	pseudogene	Chr6:112824431-112829156 (+)
AKR/J	MGP_AKRJ_G0013604	pseudogene	Chr6:115864452-115868859 (+)
BALB/cJ	MGP_BALBcJ_G0013621	pseudogene	Chr6:112643335-112648060 (+)
C3H/HeJ	MGP_C3HHeJ_G0013317	pseudogene	Chr6:68441448-68445855 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014008	pseudogene	Chr6:120318633-120323358 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013156	pseudogene	Chr6:116198830-116203240 (+)
CBA/J	MGP_CBAJ_G0013439	pseudogene	Chr6:125077228-125081635 (+)
DBA/2J	MGP_DBA2J_G0013519	pseudogene	Chr6:111763146-111767872 (+)
FVB/NJ	MGP_FVBNJ_G0013519	pseudogene	Chr6:110919797-110924523 (+)
LP/J	MGP_LPJ_G0013596	pseudogene	Chr6:117338439-117343165 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013532	pseudogene	Chr6:129272747-129277473 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013998	pseudogene	Chr6:115879023-115883749 (+)
PWK/PhJ	MGP_PWKPhJ_G0012963	pseudogene	Chr6:110746228-110750758 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012747	pseudogene	Chr6:114560285-114565013 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm19040
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000107411 (Evidence)
• NCBI Gene
  100418154

Representative Sequences			Length	Strain/Species
genomic	100418154	NCBI Gene Model | MGI Sequence Detail	3243	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;