Gm19439 Gene Detail

Summary

• Symbol
  Gm19439
• Name
  predicted gene, 19439
• Synonyms
  Gm42644

• Feature Type
  lncRNA gene
• IDs
  MGI:5011624
  NCBI Gene: 105244487
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr3:87938176-87940464 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 38.78 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  177 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011624	lncRNA gene	Chr3:87938165-87940464 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0001200	unclassified gene	Chr3:88167033-88169305 (+)
A/J	MGP_AJ_G0001181	unclassified gene	Chr3:85175339-85177606 (+)
AKR/J	MGP_AKRJ_G0001167	unclassified gene	Chr3:87269385-87271657 (+)
BALB/cJ	MGP_BALBcJ_G0001174	unclassified gene	Chr3:85269024-85271296 (+)
C3H/HeJ	MGP_C3HHeJ_G0001155	unclassified gene	Chr3:87551018-87553285 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0001289	unclassified gene	Chr3:91413357-91415629 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001000	unclassified gene	Chr3:80806994-80809274 (+)
CAST/EiJ	MGP_CASTEiJ_G0001137	unclassified gene	Chr3:87755376-87757641 (+)
CBA/J	MGP_CBAJ_G0001146	unclassified gene	Chr3:94510125-94512392 (+)
DBA/2J	MGP_DBA2J_G0001150	unclassified gene	Chr3:84665585-84667857 (+)
FVB/NJ	MGP_FVBNJ_G0001160	unclassified gene	Chr3:82939912-82942179 (+)
LP/J	MGP_LPJ_G0001209	unclassified gene	Chr3:89136944-89139216 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0001148	unclassified gene	Chr3:100764726-100766993 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001280	unclassified gene	Chr3:87025115-87027387 (+)
PWK/PhJ	MGP_PWKPhJ_G0001094	unclassified gene	Chr3:84461478-84463745 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0001070	unclassified gene	Chr3:86209736-86212010 (+)
WSB/EiJ	MGP_WSBEiJ_G0001154	unclassified gene	Chr3:87384574-87386841 (+)

Homology

• Gene Tree
  Gm19439
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm19439
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000105843 (Evidence)
• NCBI Gene
  105244487

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105843	Ensembl Gene Model | MGI Sequence Detail	2289	C57BL/6J
transcript	NR_166128	RefSeq | MGI Sequence Detail	1063	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5662781

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm19439:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29887	Chr3:87938146-87938157 (+)	-24 bp
Tssr29888	Chr3:87938159-87938170 (+)	-11 bp
Tssr29889	Chr3:87938179-87938192 (+)	10 bp