Gm19461 Gene Detail

Summary

• Symbol
  Gm19461
• Name
  predicted gene, 19461

• Feature Type
  lncRNA gene
• IDs
  MGI:5011646
  NCBI Gene: 100502933
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr1:133178136-133197546 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 57.91 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  55 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011646	lncRNA gene	Chr1:133177590-133197546 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0002745	antisense lncRNA gene	Chr1:136783581-136804565 (-)
A/J	MGP_AJ_G0002721	antisense lncRNA gene	Chr1:131706862-131726241 (-)
AKR/J	MGP_AKRJ_G0002702	antisense lncRNA gene	Chr1:135594388-135613763 (-)
BALB/cJ	MGP_BALBcJ_G0002708	antisense lncRNA gene	Chr1:132038389-132058323 (-)
C3H/HeJ	MGP_C3HHeJ_G0002666	antisense lncRNA gene	Chr1:135725087-135744451 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0002851	antisense lncRNA gene	Chr1:141848320-141869937 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002398	antisense lncRNA gene	Chr1:124860474-124879787 (-)
CAST/EiJ	MGP_CASTEiJ_G0002639	antisense lncRNA gene	Chr1:134753567-134773005 (-)
CBA/J	MGP_CBAJ_G0002662	antisense lncRNA gene	Chr1:146675024-146694420 (-)
DBA/2J	MGP_DBA2J_G0002668	antisense lncRNA gene	Chr1:130676814-130696130 (-)
FVB/NJ	MGP_FVBNJ_G0002688	antisense lncRNA gene	Chr1:129317943-129337259 (-)
LP/J	MGP_LPJ_G0002746	antisense lncRNA gene	Chr1:138093438-138114000 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002678	antisense lncRNA gene	Chr1:152457313-152476925 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002856	antisense lncRNA gene	Chr1:135331620-135350939 (-)
PWK/PhJ	MGP_PWKPhJ_G0002596	antisense lncRNA gene	Chr1:129681914-129701748 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0002548	antisense lncRNA gene	Chr1:134194425-134311658 (-)
WSB/EiJ	MGP_WSBEiJ_G0002668	antisense lncRNA gene	Chr1:135341097-135361654 (-)

Homology

• Gene Tree
  Gm19461
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm19461
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000101693 (Evidence)
• NCBI Gene
  100502933

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101693	Ensembl Gene Model | MGI Sequence Detail	19411	C57BL/6J
transcript	ENSMUST00000191207	Ensembl | MGI Sequence Detail	2566	Not Applicable

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm19461:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr13685	Chr1:133186278-133186291 (-)	11,261 bp
Tssr13684	Chr1:133186244-133186252 (-)	11,298 bp
Tssr13683	Chr1:133184060-133184083 (-)	13,474 bp