Gm19480 Pseudogene Detail

Summary

• Symbol
  Gm19480
• Name
  predicted gene, 19480

• Feature Type
  pseudogene
• IDs
  MGI:5011665
  NCBI Gene: 100502972
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:44912646-44913312 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 23.63 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011665	pseudogene	Chr1:44912646-44916560 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010101	pseudogene	Chr1:43902677-43903343 (-)
A/J	MGP_AJ_G0010088	pseudogene	Chr1:42572837-42573503 (-)
AKR/J	MGP_AKRJ_G0010070	pseudogene	Chr1:43163801-43164467 (-)
BALB/cJ	MGP_BALBcJ_G0010076	pseudogene	Chr1:42195807-42196473 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0010325	pseudogene	Chr1:45688398-45689064 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009085	pseudogene	Chr1:39337000-39337664 (-)
CAST/EiJ	MGP_CASTEiJ_G0009836	pseudogene	Chr1:43526637-43527303 (-)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0010001	pseudogene	Chr1:41848699-41849365 (-)
FVB/NJ	MGP_FVBNJ_G0010027	pseudogene	Chr1:41326832-41327498 (-)
LP/J	MGP_LPJ_G0010092	pseudogene	Chr1:44254299-44254965 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0009985	pseudogene	Chr1:49040827-49041493 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010303	pseudogene	Chr1:43364548-43365214 (-)
PWK/PhJ	MGP_PWKPhJ_G0009746	pseudogene	Chr1:41672754-41673420 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0009560	pseudogene	Chr1:43381626-43382292 (-)
WSB/EiJ	MGP_WSBEiJ_G0009904	pseudogene	Chr1:43356248-43356914 (-)

Homology

• Gene Tree
  Gm19480
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm19480
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000100013 (Evidence)
• NCBI Gene
  100502972

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100013	Ensembl Gene Model | MGI Sequence Detail	667	C57BL/6J
transcript	ENSMUST00000185547	Ensembl | MGI Sequence Detail	667	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;