Gm19557 Gene Detail

Summary

• Symbol
  Gm19557
• Name
  predicted gene, 19557

• Feature Type
  lncRNA gene
• IDs
  MGI:5011742
  NCBI Gene: 100503104
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr19:47501421-47505017 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 39.65 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  264 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011742	lncRNA gene	Chr19:47501421-47505017 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003485	antisense lncRNA gene	Chr19:47333126-47336722 (+)
A/J	MGP_AJ_G0003465	antisense lncRNA gene	Chr19:44960634-44964230 (+)
AKR/J	MGP_AKRJ_G0003444	antisense lncRNA gene	Chr19:46429682-46433278 (+)
BALB/cJ	MGP_BALBcJ_G0003454	antisense lncRNA gene	Chr19:45016272-45019868 (+)
C3H/HeJ	MGP_C3HHeJ_G0003402	antisense lncRNA gene	Chr19:46612488-46617260 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003592	antisense lncRNA gene	Chr19:48460524-48464120 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003102	antisense lncRNA gene	Chr19:44192150-44195717 (+)
CAST/EiJ	MGP_CASTEiJ_G0003365	antisense lncRNA gene	Chr19:46437148-46440746 (+)
CBA/J	MGP_CBAJ_G0003399	antisense lncRNA gene	Chr19:50914567-50918142 (+)
DBA/2J	MGP_DBA2J_G0003407	antisense lncRNA gene	Chr19:44770532-44774128 (+)
FVB/NJ	MGP_FVBNJ_G0003426	antisense lncRNA gene	Chr19:44568841-44572437 (+)
LP/J	MGP_LPJ_G0003480	antisense lncRNA gene	Chr19:47226030-47229626 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003414	antisense lncRNA gene	Chr19:50169827-50173402 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003595	antisense lncRNA gene	Chr19:46546844-46550419 (+)
PWK/PhJ	MGP_PWKPhJ_G0003321	antisense lncRNA gene	Chr19:44744327-44748005 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003266	antisense lncRNA gene	Chr19:45202935-45206548 (+)
WSB/EiJ	MGP_WSBEiJ_G0003400	antisense lncRNA gene	Chr19:46705873-46709469 (+)

Homology

• Gene Tree
  Gm19557
  

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000097990 (Evidence)
• NCBI Gene
  100503104

Representative Sequences			Length	Strain/Species
genomic	100503104	NCBI Gene Model | MGI Sequence Detail	3597	C57BL/6J
transcript	NR_045322	RefSeq | MGI Sequence Detail	2765	ZRU/MplStud

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm19557:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr156863	Chr19:47499443-47499464 (+)	-1,967 bp
Tssr156864	Chr19:47499542-47499550 (+)	-1,875 bp
Tssr156865	Chr19:47501717-47501726 (+)	301 bp
Tssr156866	Chr19:47501782-47501802 (+)	371 bp