Gm19585 Gene Detail

Summary

• Symbol
  Gm19585
• Name
  predicted gene, 19585

• Feature Type
  lncRNA gene
• IDs
  MGI:5011770
  NCBI Gene: 100503190
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr17:52456317-52470514 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 27.26 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  431 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011770	lncRNA gene	Chr17:52293443-52471013 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005742	lincRNA gene	Chr17:53650163-53667467 (+)
A/J	MGP_AJ_G0005730	lincRNA gene	Chr17:52171334-52185002 (+)
AKR/J	MGP_AKRJ_G0005709	lincRNA gene	Chr17:52778291-52793725 (+)
BALB/cJ	MGP_BALBcJ_G0005710	lincRNA gene	Chr17:52072963-52086862 (+)
C3H/HeJ	MGP_C3HHeJ_G0005658	lincRNA gene	Chr17:53486519-53500952 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005870	lincRNA gene	Chr17:55752700-55766238 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005221	lincRNA gene	Chr17:48877694-48891143 (+)
CAST/EiJ	MGP_CASTEiJ_G0005600	lincRNA gene	Chr17:53793111-53807466 (+)
CBA/J	MGP_CBAJ_G0005646	lincRNA gene	Chr17:57853660-57869875 (+)
DBA/2J	MGP_DBA2J_G0005664	lincRNA gene	Chr17:50948056-50961816 (+)
FVB/NJ	MGP_FVBNJ_G0005690	lincRNA gene	Chr17:50599943-50614022 (+)
LP/J	MGP_LPJ_G0005745	lincRNA gene	Chr17:54360336-54376476 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005675	lincRNA gene	Chr17:57249176-57263623 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005870	lincRNA gene	Chr17:53100909-53115723 (+)
PWK/PhJ	MGP_PWKPhJ_G0005544	lincRNA gene	Chr17:50401711-50415669 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005463	lincRNA gene	Chr17:50087534-50101555 (+)
WSB/EiJ	MGP_WSBEiJ_G0005652	lincRNA gene	Chr17:53724185-53738754 (+)

Homology

• Gene Tree
  Gm19585
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000100150 (Evidence)
• NCBI Gene
  100503190

Representative Sequences			Length	Strain/Species
genomic	100503190	NCBI Gene Model | MGI Sequence Detail	14198	C57BL/6J
transcript	NR_155494	RefSeq | MGI Sequence Detail	1025	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm19585:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr145178	Chr17:52456313-52456323 (+)	1 bp
Tssr145179	Chr17:52456333-52456367 (+)	33 bp
Tssr145180	Chr17:52470160-52470167 (+)	13,847 bp
Tssr145181	Chr17:52470249-52470260 (+)	13,938 bp