Gm19744 Gene Detail

Summary

• Symbol
  Gm19744
• Name
  predicted gene, 19744

• Feature Type
  lncRNA gene
• IDs
  MGI:5011929
  NCBI Gene: 100503519
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:49296512-49323573 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 27.24 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  681 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011929	lncRNA gene	Chr8:49296512-49326617 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015714	unclassified non-coding RNA gene	Chr8:48102255-48131405 (+)
A/J	MGP_AJ_G0015692	unclassified non-coding RNA gene	Chr8:46213293-46241228 (+)
AKR/J	MGP_AKRJ_G0015655	unclassified non-coding RNA gene	Chr8:47559637-47588415 (+)
BALB/cJ	MGP_BALBcJ_G0015653	unclassified non-coding RNA gene	Chr8:46404315-46430762 (+)
C3H/HeJ	MGP_C3HHeJ_G0015475	unclassified non-coding RNA gene	Chr8:48130174-48157896 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016108	unclassified non-coding RNA gene	Chr8:49932178-49962825 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013836	unclassified non-coding RNA gene	Chr8:42440802-42467397 (+)
CAST/EiJ	MGP_CASTEiJ_G0015030	unclassified non-coding RNA gene	Chr8:47625462-47655404 (+)
CBA/J	MGP_CBAJ_G0015456	unclassified non-coding RNA gene	Chr8:51882480-51921059 (+)
DBA/2J	MGP_DBA2J_G0015552	unclassified non-coding RNA gene	Chr8:46012311-46038578 (+)
FVB/NJ	MGP_FVBNJ_G0015558	unclassified non-coding RNA gene	Chr8:45479035-45505001 (+)
LP/J	MGP_LPJ_G0015632	unclassified non-coding RNA gene	Chr8:48109522-48138729 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015580	unclassified non-coding RNA gene	Chr8:51890522-51934897 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016150	unclassified non-coding RNA gene	Chr8:47770915-47799265 (+)
PWK/PhJ	MGP_PWKPhJ_G0014811	unclassified non-coding RNA gene	Chr8:45569038-45595478 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014600	unclassified non-coding RNA gene	Chr8:46915035-46943900 (+)
WSB/EiJ	MGP_WSBEiJ_G0015134	unclassified non-coding RNA gene	Chr8:48024300-48051989 (+)

Homology

• Gene Tree
  Gm19744
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm19744
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000100706 (Evidence)
• NCBI Gene
  100503519

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100706	Ensembl Gene Model | MGI Sequence Detail	27062	C57BL/6J
transcript	ENSMUST00000188936	Ensembl | MGI Sequence Detail	4533	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm19744:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr77350	Chr8:49296552-49296563 (+)	46 bp