Gm19774 Pseudogene Detail

Summary

• Symbol
  Gm19774
• Name
  predicted gene, 19774

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5011959
  NCBI Gene: 102632739
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr18:38847453-38847566 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 20.60 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5011959	pseudogene	Chr18:38847376-38847818 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011437	pseudogene	Chr18:37207733-37207846 (+)
A/J	MGP_AJ_G0011431	pseudogene	Chr18:35907442-35907555 (+)
AKR/J	MGP_AKRJ_G0011395	pseudogene	Chr18:36885685-36885798 (+)
BALB/cJ	MGP_BALBcJ_G0011409	pseudogene	Chr18:35979489-35979602 (+)
C3H/HeJ	MGP_C3HHeJ_G0011297	pseudogene	Chr18:36964916-36965029 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011702	pseudogene	Chr18:38526614-38526727 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011554	pseudogene	Chr5:25406894-25407007 (-)
CAST/EiJ	MGP_CASTEiJ_G0011104	pseudogene	Chr18:36919460-36919573 (+)
CBA/J	MGP_CBAJ_G0011273	pseudogene	Chr18:39663875-39663988 (+)
DBA/2J	MGP_DBA2J_G0011326	pseudogene	Chr18:35497029-35497142 (+)
FVB/NJ	MGP_FVBNJ_G0011332	pseudogene	Chr18:35215752-35215865 (+)
LP/J	MGP_LPJ_G0011397	pseudogene	Chr18:37245249-37245362 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011324	pseudogene	Chr18:40879468-40879581 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011688	pseudogene	Chr18:36775006-36775119 (+)
PWK/PhJ	MGP_PWKPhJ_G0010966	pseudogene	Chr18:35725711-35725824 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012207	pseudogene	Chr5:27953696-27953809 (-)
WSB/EiJ	MGP_WSBEiJ_G0011135	pseudogene	Chr18:36661596-36661709 (+)

Homology

• Gene Tree
  Gm19774
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000099488 (Evidence)
• NCBI Gene
  102632739

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099488	Ensembl Gene Model | MGI Sequence Detail	114	C57BL/6J
transcript	ENSMUST00000190667	Ensembl | MGI Sequence Detail	114	Not Applicable
polypeptide	NP_001357818	RefSeq | MGI Sequence Detail	37	ZRU/MplStud

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm19774:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150810	Chr18:38847368-38847387 (+)	-75 bp
Tssr150811	Chr18:38847413-38847437 (+)	-28 bp