Gm19872 Gene Detail

Summary

• Symbol
  Gm19872
• Name
  predicted gene, 19872

• Feature Type
  lncRNA gene
• IDs
  MGI:5012057
  NCBI Gene: 100503751
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:88187147-88190420 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 42.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  206 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5012057	lncRNA gene	Chr8:88187097-88190425 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007357	lincRNA gene	Chr8:88470112-88473434 (+)
A/J	MGP_AJ_G0007354	lincRNA gene	Chr8:84997675-85001029 (+)
AKR/J	MGP_AKRJ_G0007326	lincRNA gene	Chr8:87515836-87519156 (+)
BALB/cJ	MGP_BALBcJ_G0007332	lincRNA gene	Chr8:85167965-85171287 (+)
C3H/HeJ	MGP_C3HHeJ_G0007276	lincRNA gene	Chr8:88112694-88116008 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007503	lincRNA gene	Chr8:91829190-91832514 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006696	lincRNA gene	Chr8:79006060-79009370 (+)
CAST/EiJ	MGP_CASTEiJ_G0007178	lincRNA gene	Chr8:87523541-87526921 (+)
CBA/J	MGP_CBAJ_G0007258	lincRNA gene	Chr8:94948290-94951612 (+)
DBA/2J	MGP_DBA2J_G0007281	lincRNA gene	Chr8:84603547-84606869 (+)
FVB/NJ	MGP_FVBNJ_G0007302	lincRNA gene	Chr8:83560261-83563575 (+)
LP/J	MGP_LPJ_G0007362	lincRNA gene	Chr8:88601879-88605201 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007278	lincRNA gene	Chr8:97453158-97456474 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007505	lincRNA gene	Chr8:87512478-87515794 (+)
PWK/PhJ	MGP_PWKPhJ_G0007120	lincRNA gene	Chr8:83861098-83864516 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0007027	lincRNA gene	Chr8:86294633-86298088 (+)
WSB/EiJ	MGP_WSBEiJ_G0007238	lincRNA gene	Chr8:87944377-87947728 (+)

Homology

• Gene Tree
  Gm19872
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  30 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm19872
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000098295 (Evidence)
• NCBI Gene
  100503751

Representative Sequences			Length	Strain/Species
genomic	100503751	NCBI Gene Model | MGI Sequence Detail	3274	C57BL/6J
transcript	NR_166506	RefSeq | MGI Sequence Detail	632	ZRU/MplStud

References

• Summaries
  All 33

  Phenotypes 30
• Earliest
  J:13049 Gruneberg H, Genetical studies on the skeleton of the mouse. XVIII. Three genes for syndactylism. J Genet. 1956;54(1):113-145
• Latest
  J:348117 Okuma H, et al., N-terminal domain on dystroglycan enables LARGE1 to extend matriglycan on alpha-dystroglycan and prevents muscular dystrophy. Elife. 2023 Feb 1;12

TSS for Gm19872:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr78594	Chr8:88187142-88187149 (+)	-1 bp