Gm19898 Pseudogene Detail

Summary

• Symbol
  Gm19898
• Name
  predicted gene, 19898

• Feature Type
  pseudogene
• IDs
  MGI:5012083
  NCBI Gene: 105245439
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:99211930-99212180 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 49.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  152 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5012083	pseudogene	Chr12:99211930-99212300 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010935	pseudogene	Chr12:100649368-100649618 (+)
A/J	MGP_AJ_G0010942	pseudogene	Chr12:96880555-96880805 (+)
AKR/J	MGP_AKRJ_G0010897	pseudogene	Chr12:99492091-99492341 (+)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0010813	pseudogene	Chr12:100035123-100035373 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0011772	pseudogene	Chr5:135360402-135360613 (-)
CAST/EiJ	MGP_CASTEiJ_G0010646	pseudogene	Chr12:95117225-95117475 (+)
CBA/J	MGP_CBAJ_G0010786	pseudogene	Chr12:107590510-107590760 (+)
DBA/2J	MGP_DBA2J_G0010835	pseudogene	Chr12:96312329-96312579 (+)
FVB/NJ	MGP_FVBNJ_G0010847	pseudogene	Chr12:95025614-95025864 (+)
LP/J	MGP_LPJ_G0010918	pseudogene	Chr12:100483246-100483496 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010828	pseudogene	Chr12:111266958-111267208 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011173	pseudogene	Chr12:99059158-99059408 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0010347	pseudogene	Chr12:93221024-93221235 (+)
WSB/EiJ	MGP_WSBEiJ_G0010688	pseudogene	Chr12:99894290-99894540 (+)

Homology

• Gene Tree
  Gm19898
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm19898
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000093419 (Evidence)
• NCBI Gene
  105245439

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093419	Ensembl Gene Model | MGI Sequence Detail	251	C57BL/6J
transcript	ENSMUST00000177490	Ensembl | MGI Sequence Detail	251	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;