Gm19967 Gene Detail

Summary

• Symbol
  Gm19967
• Name
  predicted gene, 19967

• Feature Type
  lncRNA gene
• IDs
  MGI:5012152
  NCBI Gene: 100503922
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:70755486-70763580 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 43.21 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  67 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5012152	lncRNA gene	Chr11:70755486-70763580 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036894	sense intronic lncRNA gene	Chr11:71433168-71443310 (+)
A/J	MGP_AJ_G0036882	sense intronic lncRNA gene	Chr11:68721141-68729246 (+)
AKR/J	MGP_AKRJ_G0036829	sense intronic lncRNA gene	Chr11:70790589-70800213 (+)
BALB/cJ	MGP_BALBcJ_G0036873	sense intronic lncRNA gene	Chr11:69030640-69038748 (+)
C3H/HeJ	MGP_C3HHeJ_G0036558	sense intronic lncRNA gene	Chr11:70814906-70823035 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037386	sense intronic lncRNA gene	Chr11:73602030-73610135 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034446	sense intronic lncRNA gene	Chr11:65629843-65638541 (+)
CAST/EiJ	MGP_CASTEiJ_G0035747	sense intronic lncRNA gene	Chr11:71095905-71104975 (+)
CBA/J	MGP_CBAJ_G0036533	sense intronic lncRNA gene	Chr11:76917921-76926036 (+)
DBA/2J	MGP_DBA2J_G0036710	sense intronic lncRNA gene	Chr11:68298711-68306846 (+)
FVB/NJ	MGP_FVBNJ_G0036661	sense intronic lncRNA gene	Chr11:67941290-67949403 (+)
LP/J	MGP_LPJ_G0036756	sense intronic lncRNA gene	Chr11:72011099-72019209 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036667	sense intronic lncRNA gene	Chr11:77464970-77473097 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037502	sense intronic lncRNA gene	Chr11:71047901-71056009 (+)
PWK/PhJ	MGP_PWKPhJ_G0035441	sense intronic lncRNA gene	Chr11:68940138-68954607 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035252	sense intronic lncRNA gene	Chr11:70863538-70871703 (+)
WSB/EiJ	MGP_WSBEiJ_G0035947	sense intronic lncRNA gene	Chr11:70711416-70720531 (+)

Homology

• Gene Tree
  Gm19967
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm19967
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000093858 (Evidence)
• NCBI Gene
  100503922

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093858	Ensembl Gene Model | MGI Sequence Detail	8095	C57BL/6J
transcript	ENSMUST00000179676	Ensembl | MGI Sequence Detail	2138	Not Applicable

References

• Summaries
  All 11

  Phenotypes 8
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm19967:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr102797	Chr11:70760487-70760495 (+)	5,005 bp