Gm20058 Pseudogene Detail

Summary

• Symbol
  Gm20058
• Name
  predicted gene, 20058

• Feature Type
  pseudogene
• IDs
  MGI:5012243
  NCBI Gene: 100504091
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:123201868-123204500 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 53.68 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  216 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5012243	pseudogene	Chr1:123201868-123204500 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010330	pseudogene	Chr1:126207134-126209767 (+)
A/J	MGP_AJ_G0010320	pseudogene	Chr1:121642938-121645571 (+)
AKR/J	MGP_AKRJ_G0010289	pseudogene	Chr1:125200161-125202793 (+)
BALB/cJ	MGP_BALBcJ_G0010295	pseudogene	Chr1:121943473-121946106 (+)
C3H/HeJ	MGP_C3HHeJ_G0010231	pseudogene	Chr1:125410665-125413298 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010571	pseudogene	Chr1:131007947-131010579 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009258	pseudogene	Chr1:115169741-115173722 (+)
CAST/EiJ	MGP_CASTEiJ_G0010054	pseudogene	Chr1:124245011-124247636 (+)
CBA/J	MGP_CBAJ_G0010200	pseudogene	Chr1:135493475-135496108 (+)
DBA/2J	MGP_DBA2J_G0010233	pseudogene	Chr1:120686103-120688735 (+)
FVB/NJ	MGP_FVBNJ_G0010256	pseudogene	Chr1:119409114-119411746 (+)
LP/J	MGP_LPJ_G0010316	pseudogene	Chr1:127546790-127549423 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010212	pseudogene	Chr1:141323196-141325828 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010533	pseudogene	Chr1:124962372-124965005 (+)
PWK/PhJ	MGP_PWKPhJ_G0009957	pseudogene	Chr1:119644960-119647578 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009769	pseudogene	Chr1:123897219-123899712 (+)
WSB/EiJ	MGP_WSBEiJ_G0010121	pseudogene	Chr1:124850808-124853438 (+)

Homology

• Gene Tree
  Gm20058
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm20058
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000100525 (Evidence)
• NCBI Gene
  100504091

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100525	Ensembl Gene Model | MGI Sequence Detail	2633	C57BL/6J
transcript	ENSMUST00000186939	Ensembl | MGI Sequence Detail	284	Not Applicable

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45