Gm20162 Pseudogene Detail

Summary

• Symbol
  Gm20162
• Name
  predicted gene, 20162

• Feature Type
  pseudogene
• IDs
  MGI:5012347
  NCBI Gene: 100504306
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr18:37567296-37568166 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 19.49 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  216 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5012347	pseudogene	Chr18:37566305-37568476 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011436	pseudogene	Chr18:35827039-35827909 (+)
A/J	MGP_AJ_G0011429	pseudogene	Chr18:34607276-34608146 (+)
AKR/J	MGP_AKRJ_G0011393	pseudogene	Chr18:35558485-35559355 (+)
BALB/cJ	MGP_BALBcJ_G0011408	pseudogene	Chr18:34653857-34654727 (+)
C3H/HeJ	MGP_C3HHeJ_G0011295	pseudogene	Chr18:35630951-35631821 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011701	pseudogene	Chr18:37127087-37127957 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010258	pseudogene	Chr18:34659168-34659993 (+)
CAST/EiJ	MGP_CASTEiJ_G0011103	pseudogene	Chr18:35592770-35593606 (+)
CBA/J	MGP_CBAJ_G0011271	pseudogene	Chr18:38216312-38217182 (+)
DBA/2J	MGP_DBA2J_G0011324	pseudogene	Chr18:34203993-34204863 (+)
FVB/NJ	MGP_FVBNJ_G0011331	pseudogene	Chr18:33928158-33929028 (+)
LP/J	MGP_LPJ_G0011396	pseudogene	Chr18:35909610-35910480 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011323	pseudogene	Chr18:39494933-39495803 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011687	pseudogene	Chr18:35426048-35426918 (+)
PWK/PhJ	MGP_PWKPhJ_G0010965	pseudogene	Chr18:34440525-34441395 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010787	pseudogene	Chr18:35663982-35664822 (+)
WSB/EiJ	MGP_WSBEiJ_G0011134	pseudogene	Chr18:35318476-35319346 (+)

Homology

• Gene Tree
  Gm20162
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  4
• Endonuclease-mediated
  1
• Targeted
  3
• Genomic Mutations
  4 involving Gm20162
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000103483 (Evidence)
• NCBI Gene
  100504306

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103483	Ensembl Gene Model | MGI Sequence Detail	871	C57BL/6J
transcript	ENSMUST00000193629	Ensembl | MGI Sequence Detail	871	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:244163 Hasegawa S, et al., Distinct and Cooperative Functions for the Protocadherin-alpha, -beta and -gamma Clusters in Neuronal Survival and Axon Targeting. Front Mol Neurosci. 2016;9:155
• Latest
  J:313451 Xu L, et al., Abnormal neocortex arealization and Sotos-like syndrome-associated behavior in Setd2 mutant mice. Sci Adv. 2021 Jan;7(1)