Gm20172 Gene Detail

Summary

• Symbol
  Gm20172
• Name
  predicted gene, 20172

• Feature Type
  protein coding gene
• IDs
  MGI:5012357
  NCBI Gene: 100504323
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:25315485-25317035 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 10.48 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  161 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5012357	protein coding gene	Chr1:25315485-25317035 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0000371	unclassified gene	Chr1:23161132-23167144 (-)
A/J	MGP_AJ_G0000343	unclassified gene	Chr1:22681870-22687351 (-)
AKR/J	MGP_AKRJ_G0000332	unclassified gene	Chr1:22950062-22951620 (-)
BALB/cJ	MGP_BALBcJ_G0000337	unclassified gene	Chr1:22438766-22440328 (-)
C3H/HeJ	MGP_C3HHeJ_G0000322	unclassified gene	Chr1:22951972-22955098 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0000452	unclassified gene	Chr1:24215521-24217071 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000212	unclassified gene	Chr1:20678284-20679608 (-)
CAST/EiJ	MGP_CASTEiJ_G0000318	unclassified gene	Chr1:23015755-23017251 (-)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0000319	unclassified gene	Chr1:22157373-22163394 (-)
FVB/NJ	MGP_FVBNJ_G0000332	unclassified gene	Chr1:21894555-21896260 (-)
LP/J	MGP_LPJ_G0000376	unclassified gene	Chr1:23369665-23371194 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000334	unclassified gene	Chr1:25843107-25848692 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000447	unclassified gene	Chr1:22822271-22823809 (-)
PWK/PhJ	MGP_PWKPhJ_G0000274	unclassified gene	Chr1:21890269-21891784 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0000255	unclassified gene	Chr1:22920279-22921756 (-)
WSB/EiJ	MGP_WSBEiJ_G0000323	unclassified gene	Chr1:22794448-22795960 (-)

Homology

• Gene Tree
  Gm20172
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm20172
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000104257 (Evidence)
• NCBI Gene
  100504323

Representative Sequences			Length	Strain/Species
genomic	100504323	NCBI Gene Model | MGI Sequence Detail	1551	C57BL/6J
transcript	NM_001204913	RefSeq | MGI Sequence Detail	1551	ZRU/MplStud
polypeptide	NP_001191842	RefSeq | MGI Sequence Detail	124	ZRU/MplStud

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;