Tlx1os Gene Detail

Summary

• Symbol
  Tlx1os
• Name
  T cell leukemia, homeobox 1, opposite strand
• Synonyms
  Gm20424

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:5141889
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:45142496-45147743 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 38.46 cM

Strain
Comparison

• SNPs within 2kb
  256 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141889	antisense lncRNA gene	Chr19:45142496-45147743 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003483	antisense lncRNA gene	Chr19:44706385-44711499 (-)
A/J	MGP_AJ_G0003463	antisense lncRNA gene	Chr19:42547871-42553037 (-)
AKR/J	MGP_AKRJ_G0003442	antisense lncRNA gene	Chr19:43918135-43923264 (-)
BALB/cJ	MGP_BALBcJ_G0003452	antisense lncRNA gene	Chr19:42599159-42604216 (-)
C3H/HeJ	MGP_C3HHeJ_G0003400	antisense lncRNA gene	Chr19:44080207-44087016 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003590	antisense lncRNA gene	Chr19:45810742-45817776 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003100	antisense lncRNA gene	Chr19:41815055-41820323 (-)
CAST/EiJ	MGP_CASTEiJ_G0003363	antisense lncRNA gene	Chr19:43825879-43831013 (-)
CBA/J	MGP_CBAJ_G0003397	antisense lncRNA gene	Chr19:48122824-48137182 (-)
DBA/2J	MGP_DBA2J_G0003405	antisense lncRNA gene	Chr19:42367065-42372366 (-)
FVB/NJ	MGP_FVBNJ_G0003424	antisense lncRNA gene	Chr19:42139109-42144233 (-)
LP/J	MGP_LPJ_G0003478	antisense lncRNA gene	Chr19:44648421-44653536 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003412	antisense lncRNA gene	Chr19:47503879-47509094 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003593	antisense lncRNA gene	Chr19:43991245-43997783 (-)
PWK/PhJ	MGP_PWKPhJ_G0003319	antisense lncRNA gene	Chr19:42290899-42296129 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003264	antisense lncRNA gene	Chr19:42681565-42686697 (-)
WSB/EiJ	MGP_WSBEiJ_G0003398	antisense lncRNA gene	Chr19:44151209-44156266 (-)

Homology

• Gene Tree
  Tlx1os
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000092346 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092346	Ensembl Gene Model | MGI Sequence Detail	5248	C57BL/6J
transcript	ENSMUST00000173437	Ensembl | MGI Sequence Detail	620	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Tlx1os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr159548	Chr19:45147741-45147751 (-)	-3 bp