Gm20460 Gene Detail

Summary

• Symbol
  Gm20460
• Name
  predicted gene 20460

• Feature Type
  lncRNA gene
• IDs
  MGI:5141925
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr17:34833458-34846323 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 18.19 cM

Strain
Comparison

• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141925	lncRNA gene	Chr17:34833458-34846323 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015349	unclassified non-coding RNA gene	Chr17:34693236-34706032 (-)
A/J	MGP_AJ_G0015324	unclassified non-coding RNA gene	Chr17:33512832-33525388 (-)
AKR/J	MGP_AKRJ_G0015287	unclassified non-coding RNA gene	Chr17:33929381-33943506 (-)
BALB/cJ	MGP_BALBcJ_G0015287	unclassified non-coding RNA gene	Chr17:33660255-33672764 (-)
C3H/HeJ	MGP_C3HHeJ_G0015111	unclassified non-coding RNA gene	Chr17:34323761-34336272 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015741	unclassified non-coding RNA gene	Chr17:36008921-36026387 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013482	unclassified non-coding RNA gene	Chr17:31400795-31413961 (-)
CAST/EiJ	MGP_CASTEiJ_G0014662	unclassified non-coding RNA gene	Chr17:34395480-34409276 (-)
CBA/J	MGP_CBAJ_G0015090	unclassified non-coding RNA gene	Chr17:37542864-37555634 (-)
DBA/2J	MGP_DBA2J_G0015185	unclassified non-coding RNA gene	Chr17:32802762-32815666 (-)
FVB/NJ	MGP_FVBNJ_G0015192	unclassified non-coding RNA gene	Chr17:32706664-32719799 (-)
LP/J	MGP_LPJ_G0015265	unclassified non-coding RNA gene	Chr17:34964373-34979037 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015218	unclassified non-coding RNA gene	Chr17:36428710-36442526 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015781	unclassified non-coding RNA gene	Chr17:34240034-34252593 (-)
PWK/PhJ	MGP_PWKPhJ_G0014452	unclassified non-coding RNA gene	Chr17:31731755-31744572 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014239	unclassified non-coding RNA gene	Chr17:32224785-32238067 (-)
WSB/EiJ	MGP_WSBEiJ_G0014769	unclassified non-coding RNA gene	Chr17:34331371-34347393 (-)

Homology

• Gene Tree
  Gm20460
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000092176 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092176	Ensembl Gene Model | MGI Sequence Detail	12866	C57BL/6J
transcript	ENSMUST00000168709	Ensembl | MGI Sequence Detail	1572	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm20460:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr147622	Chr17:34846339-34846425 (-)	-59 bp
Tssr147621	Chr17:34846140-34846165 (-)	170 bp
Tssr147620	Chr17:34846085-34846098 (-)	231 bp
Tssr147619	Chr17:34846056-34846066 (-)	262 bp