Gm20488 Gene Detail

Summary

• Symbol
  Gm20488
• Name
  predicted gene 20488

• Feature Type
  lncRNA gene
• IDs
  MGI:5141953
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr5:149291941-149354147 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 89.18 cM

Strain
Comparison

• SNPs within 2kb
  2022 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141953	lncRNA gene	Chr5:149291941-149354147 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015619	unclassified non-coding RNA gene	Chr5:155179889-155250832 (+)
A/J	MGP_AJ_G0015595	unclassified non-coding RNA gene	Chr5:148568126-148632449 (+)
AKR/J	MGP_AKRJ_G0015559	unclassified non-coding RNA gene	Chr5:153149612-153214334 (+)
BALB/cJ	MGP_BALBcJ_G0015557	unclassified non-coding RNA gene	Chr5:149814523-149877489 (+)
C3H/HeJ	MGP_C3HHeJ_G0015379	unclassified non-coding RNA gene	Chr5:154143858-154209549 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016011	unclassified non-coding RNA gene	Chr5:160880349-160945072 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013745	unclassified non-coding RNA gene	Chr5:142916534-142980155 (+)
CAST/EiJ	MGP_CASTEiJ_G0014935	unclassified non-coding RNA gene	Chr5:153763346-153827666 (+)
CBA/J	MGP_CBAJ_G0015360	unclassified non-coding RNA gene	Chr5:167628470-167712389 (+)
DBA/2J	MGP_DBA2J_G0015454	unclassified non-coding RNA gene	Chr5:148219879-148283302 (+)
FVB/NJ	MGP_FVBNJ_G0015461	unclassified non-coding RNA gene	Chr5:147475466-147540680 (+)
LP/J	MGP_LPJ_G0015535	unclassified non-coding RNA gene	Chr5:155875548-155946682 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015484	unclassified non-coding RNA gene	Chr5:169761178-169835194 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016053	unclassified non-coding RNA gene	Chr5:153085047-153151021 (+)
PWK/PhJ	MGP_PWKPhJ_G0014720	unclassified non-coding RNA gene	Chr5:147380768-147449048 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014508	unclassified non-coding RNA gene	Chr5:150393352-150461409 (+)
WSB/EiJ	MGP_WSBEiJ_G0015039	unclassified non-coding RNA gene	Chr5:153898760-153964435 (+)

Homology

• Gene Tree
  Gm20488
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000107314 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107314	Ensembl Gene Model | MGI Sequence Detail	62207	C57BL/6J
transcript	ENSMUST00000201641	Ensembl | MGI Sequence Detail	2996	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm20488:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49899	Chr5:149291850-149291866 (+)	-83 bp
Tssr49900	Chr5:149291878-149291888 (+)	-58 bp
Tssr49901	Chr5:149291909-149291926 (+)	-23 bp
Tssr49902	Chr5:149291951-149291971 (+)	20 bp
Tssr49903	Chr5:149292591-149292601 (+)	655 bp
Tssr49904	Chr5:149297865-149297882 (+)	5,933 bp