Gm20492 Gene Detail

Summary

• Symbol
  Gm20492
• Name
  predicted gene 20492

• Feature Type
  lncRNA gene
• IDs
  MGI:5141957
  NCBI Gene: 102632786
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr10:127124366-127125702 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 74.50 cM

Strain
Comparison

• SNPs within 2kb
  42 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141957	lncRNA gene	Chr10:127124366-127125702 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015143	unclassified non-coding RNA gene	Chr10:130878969-130880047 (+)
A/J	MGP_AJ_G0015117	unclassified non-coding RNA gene	Chr10:125633873-125635040 (+)
AKR/J	MGP_AKRJ_G0015080	unclassified non-coding RNA gene	Chr10:129348209-129351080 (+)
BALB/cJ	MGP_BALBcJ_G0015080	unclassified non-coding RNA gene	Chr10:126045412-126046840 (+)
C3H/HeJ	MGP_C3HHeJ_G0014903	unclassified non-coding RNA gene	Chr10:129501077-129502241 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015536	unclassified non-coding RNA gene	Chr10:135314426-135315879 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013282	unclassified non-coding RNA gene	Chr10:119642700-119643881 (+)
CAST/EiJ	MGP_CASTEiJ_G0014457	unclassified non-coding RNA gene	Chr10:130158498-130161070 (+)
CBA/J	MGP_CBAJ_G0014882	unclassified non-coding RNA gene	Chr10:140766210-140767374 (+)
DBA/2J	MGP_DBA2J_G0014975	unclassified non-coding RNA gene	Chr10:124726348-124727513 (+)
FVB/NJ	MGP_FVBNJ_G0014986	unclassified non-coding RNA gene	Chr10:123666758-123668124 (+)
LP/J	MGP_LPJ_G0015057	unclassified non-coding RNA gene	Chr10:131447866-131450232 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015013	unclassified non-coding RNA gene	Chr10:143469761-143470860 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015575	unclassified non-coding RNA gene	Chr10:129414614-129415778 (+)
PWK/PhJ	MGP_PWKPhJ_G0014249	unclassified non-coding RNA gene	Chr10:124929480-124930685 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014037	unclassified non-coding RNA gene	Chr10:128450473-128454759 (+)
WSB/EiJ	MGP_WSBEiJ_G0014560	unclassified non-coding RNA gene	Chr10:129643616-129645978 (+)

Homology

• Gene Tree
  Gm20492
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000092593 (Evidence)
• NCBI Gene
  102632786

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092593	Ensembl Gene Model | MGI Sequence Detail	1337	C57BL/6J
transcript	ENSMUST00000172591	Ensembl | MGI Sequence Detail	455	Not Applicable

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm20492:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr96176	Chr10:127123949-127123954 (+)	-414 bp
Tssr96177	Chr10:127124359-127124390 (+)	9 bp
Tssr96178	Chr10:127124397-127124420 (+)	43 bp
Tssr3392	Chr10:127124779-127124820 (+)	434 bp